Array 1 328462-330015 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLJF01000003.1 Escherichia coli strain MOD1-EC5654 MOD1-EC5654_3_length_395472_cov_61.7932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 328462 29 100.0 32 ............................. ATATCACTCGACGACTACCACGCGAGCTGTGA 328523 29 100.0 32 ............................. ATCATTCACTACCACGGCTCTCCGATCTGGGG 328584 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 328645 29 100.0 32 ............................. CGTTGGCCGCCATCAAAAATGGTACAACCTCG 328706 29 100.0 32 ............................. TGTGAAAACTCCTTTGTTACGTTATCGTTAAT 328767 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 328828 29 100.0 32 ............................. ATTTCAAATCTCCCAGGCGCGACATGACGCCG 328889 29 100.0 32 ............................. CCGATCCGCTGGCGGTGGGCGCAAACCAAACC 328950 29 96.6 32 ............................T ACTCGTTCCGTGCCGTCGCGGTGAATCGCGTC 329011 29 100.0 32 ............................. CCATGTAGTCAGGCATATGGCTGTTTGCGTAT 329072 29 100.0 32 ............................. GCTTTACCTTTATCCGACCGTTATGCCTAAGG 329133 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 329194 29 100.0 32 ............................. AGTTTACCGGAGAATAGTTACCTGCAAGTCAT 329255 29 100.0 32 ............................. ATCCGTGCACCGCGCAGAATGCCGGTTTCTGA 329316 29 100.0 32 ............................. ATTCTTACCCCGGAAGCGGAAAAACTTATTAA 329377 29 96.6 32 ............T................ ACGTTGGCTCAGTGCGCAGCAGCTATCAAACA 329438 29 100.0 32 ............................. ACAAATGACACTGAGTGAAAAGCAGCAGCGAT 329499 29 100.0 32 ............................. CGGGGTGGCCCACCAGTCACGAATAAAAACCA 329560 29 100.0 32 ............................. AATCCCAGCGGCGTTTTTGACTGAACGAACCC 329621 29 100.0 32 ............................. CCGATCACACGCTCCCACGGGCCGTACCAGTC 329682 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 329743 29 100.0 32 ............................. ATCTAACGGAGTTAATCTTATCCGACTTTTTG 329804 29 100.0 32 ............................. TCGGTGCGGTGGGCGCGGCGTCGTTCAGGATC 329865 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 329926 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 329987 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 355718-355991 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLJF01000003.1 Escherichia coli strain MOD1-EC5654 MOD1-EC5654_3_length_395472_cov_61.7932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 355718 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 355779 29 100.0 33 ............................. AAATCCAAAAAACTGGGGTATGGTGGCGTGTGG 355841 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 355902 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 355963 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //