Array 1 30469-31762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRY010000007.1 [Ruminococcus] lactaris strain MSK.17.22 BAPLHLDL_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 30469 29 100.0 35 ............................. AATTTATCCAATGGATATTTCTCCTCATATTCTCC 30533 29 100.0 47 ............................. TTGCGGTGCCTAGCCCCGCGTATAAAAGTCATCATTATCAGATTTTA 30609 29 100.0 42 ............................. AAACTCATATTCTTTCTCCTTCCAATTTTGAATGAAAAACAG 30680 29 100.0 43 ............................. TTTGCAAATTCACTATCCAATACAATTGCAAACTCTTTATCAA 30752 29 100.0 42 ............................. TTTCGGCAGCAGCAATCTCACTTGCCAGAGACTTTAAAAAGT 30823 29 100.0 49 ............................. TTGTTTGTCATTTCGTTTTGCATAATATGCCTCCTTATACTCTCCATAT 30901 29 100.0 41 ............................. CATCTGCAGGGAGAATGCATTACCAAGATAAATCATGGCAA 30971 29 100.0 51 ............................. ATATTATAAGTGGCCCATTCATCATCTTGAGCAGAGATGTTATCTCCATAA 31051 29 100.0 37 ............................. ACAGGTTATCGGATGTTCCAATCTGCATGTCTAATTC 31117 29 100.0 45 ............................. GATTGTCGGGAATCGTGAAAGTTAGTCCTTTTTCAATGAAGTGCG 31191 29 100.0 37 ............................. TCACCTAAGATTGTCATAATAGAATGTTTCATATTGT 31257 29 100.0 39 ............................. TATCCACACCATCCACAGCAAAGCCTTCATCAAGGATTT 31325 29 100.0 48 ............................. TAGCATACCCAAAACTTTTGGACTGTCCAATCAAGGTTGTCCAAGTAC 31402 29 100.0 34 ............................. ATTGTACACAAATCTGTCATTGAAGCGATCTGAT 31465 29 100.0 39 ............................. CAGTTTCTTCTTTGAGCTCTCTGACGGCACCATCGATTG 31533 29 100.0 45 ............................. ATGCTGTTTTCTCAGAAGTTGTTGCATCATCAGATACATCTTCTG 31607 29 100.0 32 ............................. ATTTCCCGATCATATATTTTTTTCATCATAAT Deletion [31668] 31668 29 96.6 37 .....................G....... TGAAAAATCAGCACACTTAGAAACATTCCAAGTTTCT 31734 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================== ================== 19 29 99.8 41 GTCGGACATTACCTATGAGGAATTGACAC # Left flank : TATATTACAGCATGGTATGGAATTTACAGACTTTGCGGTGAAAGAAAGTATCTTGATTTCCTGTATCAGACAGGTCTGGGAAGTAAAAATTCGCAAGGCTTTGGAATGTTTGAAATTTTGTGAGATGAAGGGAAAAGGAAGGTGCCTGAAACGGAGGCACTTTTCTTTGTGAAAAATAGTAAGAAAACTGATAAATACGAAAAAGTCTTAAAAAAGTCCGTCGACCTTAACTCCTTGGAAATACTGGGAATTTCAGCGGTGGAAAATGGAAAAACATCTATTTTAAACCTCAAAACACCACTTTTTAGAGGAAATGTGAAAAAAAGTCCGTCGACCTCAGGAAGAAAAATCGAGATATATAAAAAGGCTTAAAAAGTGTTGAATTTATAAGGAAAATCAGGATATGAAAAAACTGGTGTCGACGGACTTTTCGGCTGAAAATTGATTGATTTTAGGGAAAAAATGAAGTATGATGATAGCAACAGCTGATAAATACGGCT # Right flank : CGTGTACGGTATTAGAACTTTCCAATTTGTTTTATCGTCGGACATTACCTTTCCTACAAGGATTCCTTGTGCCAATACATAAGGCAAAGACATTATTTTTATTTGAAATCAATGAATGCACCGACCTGTTGATTGTAACTACTAACTTTCAACTTTATGACATGGAGAAACGGATATGAGTTTGTGTATTGAGGAAATACTGTCAGACAGTAATCTTGCGGCAGCTAGGGCATCATTTAAGGGAAAAAATGACAGCAGTGGGATGGATGGTGTACGGGTATCTGAATTGGGCGAATACTGGAATGTCAATGGTGATAAGATTAAAAAGACGATTTTGGAAGGCAAATACAGTCCGGGGCTGATCCGGCAGCAGGAAATTGTGAACCAAAAGGGAAAGAGACGGACGATCTCGCTGATGAATACAGTTGATCGTTTTATTTTTCGTGCAGTTTATCAGCAGATGGCAAAGCTGTGGGAAGGAGAATTCTCAGAGCATTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 6759-8836 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRY010000053.1 [Ruminococcus] lactaris strain MSK.17.22 BAPLHLDL_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6759 32 100.0 34 ................................ ATCTGCAGCAATTCTGATAGAAGACAATGTTCCA 6825 32 100.0 35 ................................ CTTGCAATCCGGTAGGTCCTCATACTGCTTGCAGT 6892 32 100.0 33 ................................ ATTGATGATCTGTTGGTTGAGATTTACAAATTT 6957 32 100.0 35 ................................ TCCGATAGAACAGCAAATTGATAATCACCAAATGG 7024 32 100.0 35 ................................ CAAGGTATACTGTGCAATCATTTCCTTCCCCCTTT 7091 32 100.0 33 ................................ AGAAAGGGAACAAGGTGATTATCTGGCCGATCA 7156 32 100.0 34 ................................ TCGTCACCAGTGATGACTTTATAAATCGGGTCTA 7222 32 100.0 34 ................................ CTCAAGATTCCATTGATCAGGCACGGAGCAAGTT 7288 32 100.0 32 ................................ TGTTCCTGGATCCGTCAGCAAAAGGGCTTGCG 7352 32 100.0 34 ................................ AGTAACTGGCTCTCTAGCTCATCCATGTCATATC 7418 32 100.0 33 ................................ TTAAACTCTTCGGTAGAAATAGCACTGTCTTTT 7483 32 100.0 34 ................................ TGATTTGCAATCCATCAGACTTTTTGCTCCCGTC 7549 32 100.0 35 ................................ ATGGAAATGAATCAGCTTATCGACTGCCGTGTCAA 7616 32 100.0 34 ................................ ATCCCGTAAAGACGGCAAAGACAGCGGCAGGAGA 7682 32 100.0 35 ................................ CTATTTCATCAGTTACTGATCGTTCTGTAAATACT 7749 32 100.0 33 ................................ TTGCATTATAACTATAACATACTCAAAATATAA 7814 32 100.0 32 ................................ TCGTTCTGCCCGTCCGTGTCTCCAAGCTCCTG 7878 32 100.0 35 ................................ ACCTCATCGAGAGCATTTGCATAGATTGATATTCC 7945 32 100.0 34 ................................ TTCCCAAAGCTTCCGGCATATCCATCCTGTCCAC 8011 32 100.0 33 ................................ ATGAATCCATCCCCTGCCGGAACTACATTGACC 8076 32 100.0 35 ................................ AGGCAAAAGAGAAGAAAGTCTACCATCTGCATTTC 8143 32 100.0 34 ................................ TCCAAGCGTCTGACTACGCTCGGAAATGACCATC 8209 32 100.0 33 ................................ TGCATCATGACTTGCCCTTTCGGCTTCCGCCAC 8274 32 100.0 34 ................................ CAGCTTTTTCCAGTGCAAAAAAGGAACGGGAGCG 8340 32 100.0 35 ................................ CTGCATGGATCGCCACCTTTTCGTTCAATAGGAGA 8407 32 100.0 34 ................................ TCGGAAAAATAATACCTTGTGGTCTCTCCGTTGT 8473 32 100.0 34 ................................ GGCACTTCCACGCTGATATGCTCCCGGATGTACG 8539 32 100.0 35 ................................ AGCATATTAACAACATCCAGTTCGGAGAAGGCAAG 8606 32 100.0 34 ................................ CAGTAACTGTCAACCTCGCTCCAATGCAGTCCGC 8672 32 100.0 34 ................................ CGAAAGAGACTGCCAAACCATCAGGAGGACACTA 8738 32 100.0 35 ................................ AGCATCAGGATACCTTTTACGGTGTATTCCTGACC 8805 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ =================================== ================== 32 32 99.9 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGAAATATTGCA # Right flank : TATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGGAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //