Array 1 51141-51900 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBX01000002.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2712 NODE_2_length_232756_cov_5.29064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51141 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 51202 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 51263 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 51324 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 51385 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 51446 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 51507 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 51568 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 51629 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 51690 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 51751 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 51812 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 51873 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68157-69528 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBX01000002.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2712 NODE_2_length_232756_cov_5.29064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68157 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 68218 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 68279 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 68340 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 68401 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 68462 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 68523 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 68584 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 68645 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 68706 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 68767 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 68828 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 68889 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 68950 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 69011 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 69072 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 69133 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 69194 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 69255 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 69316 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 69377 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 69438 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 69499 29 96.6 0 .......T..................... | A [69526] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //