Array 1 221384-222632 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQY01000004.1 Escherichia coli strain 8378wF9 NODE_4_length_376853_cov_14.1651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221384 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 221445 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 221506 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 221567 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 221628 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 221689 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 221750 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 221811 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 221872 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 221933 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 221994 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 222055 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 222116 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 222177 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 222238 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 222299 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 222360 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 222421 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 222482 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 222543 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 222604 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 248332-249335 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQY01000004.1 Escherichia coli strain 8378wF9 NODE_4_length_376853_cov_14.1651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 248332 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 248393 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 248454 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 248515 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 248576 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 248637 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 248698 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 248759 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 248820 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 248881 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 248942 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 249003 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 249063 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 249124 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 249185 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 249246 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 249307 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //