Array 1 136136-135375 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ268981.1 Escherichia coli strain 53-844 aerwf-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136135 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 136074 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 136013 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 135952 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 135891 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 135830 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 135769 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACTTAT 135708 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 135647 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 135586 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 135525 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 135464 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 135403 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162981-161671 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ268981.1 Escherichia coli strain 53-844 aerwf-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162980 29 100.0 32 ............................. CAAGACGACGCTCAACGACATTGCCGACGCCG 162919 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 162858 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 162797 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 162736 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 162675 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 162614 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 162553 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 162492 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 162431 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 162370 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 162309 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 162248 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 162187 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 162126 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 162065 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 162004 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 161943 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 161882 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 161821 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 161760 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 161699 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //