Array 1 22-3991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXER01000245.1 Xanthomonas oryzae pv. oryzae strain DXO-116 contig_245, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 22 31 100.0 34 ............................... AAGTATCTGCAGATCGCGTAGAAATTGATTGGAG 87 31 100.0 36 ............................... ATCGCTGCAACCGGCGCACGCCTGGCGCTGGTGTCG 154 31 100.0 34 ............................... CTTGACCTTGTCCCAGTGGCCCTGCGCAAGCCAG 219 31 100.0 34 ............................... TTGAAACGCCCCGGTACACCGTCGTGCGTGAGAT 284 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 350 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 414 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 480 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 545 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 611 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 678 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 744 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 809 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 875 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 940 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 1005 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 1070 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 1136 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 1201 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 1265 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 1330 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 1396 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 1463 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 1529 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 1594 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 1660 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 1726 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 1791 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 1855 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 1920 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 1985 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 2051 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 2117 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 2183 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 2249 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 2316 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 2383 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 2449 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 2516 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 2581 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 2646 31 100.0 33 ............................... TTCAGTCAGGTATTGGGCTAGCGGCTGTGTCAA 2710 31 100.0 34 ............................... TAAGGAGGCTTTATGCCAGATGAAAAAAAGCTGG 2775 31 100.0 36 ............................... AGCTGGAAGAAGCCTAGGAAGGGTGTAAAGCCAGGT 2842 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 2909 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 2975 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 3041 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 3108 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 3174 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 3240 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 3309 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 3376 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 3441 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 3508 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 3574 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 3639 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 3705 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 3770 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 3833 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 3897 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 3961 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 61 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGGCGCGTGCGGCAATCCCTTG # Right flank : TACCCGACCCGGTTTGACGATGCCCAGCGGATCGCGTCGCGTCCTCACGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1944-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXER01000288.1 Xanthomonas oryzae pv. oryzae strain DXO-116 contig_288, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1943 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 1877 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 1812 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 1747 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 1682 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 1615 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 1549 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 1480 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 1414 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 1350 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 1284 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 1220 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 1155 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 1090 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 1024 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 956 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 890 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 824 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 758 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 693 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 627 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 561 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 496 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 431 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 366 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 301 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 235 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 169 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 104 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 29 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGGCGCGTGGATTGAAACTATTAGATTTTTTGTACCACATTAACATTTAAT # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8289-8583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXER01000079.1 Xanthomonas oryzae pv. oryzae strain DXO-116 contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 8289 31 100.0 36 ............................... AAAGCAGTTGATAACCAGCGCCGCGGTGTCCCTGGC 8356 31 100.0 34 ............................... TTTTGATCAATTCCGGCGCGTGCGGCAATCCCTT 8421 31 100.0 34 ............................... AAGTATCTGCAGATCGCGTAGAAATTGATTGGAG 8486 31 100.0 36 ............................... ATCGCTGCAACCGGCGCACGCCTGGCGCTGGTGTCG 8553 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CTTGACCTTGTCCCAGTGGCCCTGCGCAAGCA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //