Array 1 1458-2402 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQI01000024.1 Mixta tenebrionis strain BIT-26 Scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1458 29 100.0 32 ............................. GCGCGGGGGCAGGGCTGATGGCAATTATTGAT 1519 29 100.0 32 ............................. AGGATTATTTCTTTCGCCCATCATTCCTGAAT 1580 29 100.0 32 ............................. GTGCAAGGGCCGCTGTTATTCTTGCAGCCGAA 1641 29 100.0 32 ............................. AATTGCTGAAAATCATACACGTTAAAAATATG 1702 29 100.0 32 ............................. GACGCGACGAACATCATGGCGTTACGTGACCG 1763 29 100.0 32 ............................. GAGATATCAATGTTCAGGGACGATTTTGTAAT 1824 29 100.0 32 ............................. CATTCCACCAGGATAGAAATGCTCTCCAGTCG 1885 29 100.0 32 ............................. GCGCAGGATGCCCGTAGCAATGCCGTAGCAGA 1946 29 100.0 32 ............................. CAATGGGTATGGCAGACCCGGCGCGGTGTCGT 2007 29 100.0 32 ............................. CGGTGACGCCGTGAGTAACAGGGTGTATATCT 2068 29 100.0 32 ............................. TCCCGCCTGAATATCAATAAAATATTTATAAC 2129 29 100.0 32 ............................. GCTGGGGTTTTGAGCGTAACTAATCGCCCCAT 2190 29 100.0 32 ............................. GCAGAAACAGCAGGAAGAACGGGAAGCAGACT 2251 29 100.0 32 ............................. CAGTACGGATTCGGCAATCTGTTTCCTGTCGC 2312 29 100.0 33 ............................. TGGATTTCGCTCCACGATCAAAAAATCAGTAAT 2374 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GAGTTCCCCGCGCAAGCGGGGTTAAACCG # Left flank : TTTGCGAAGGCGCGTGCAGCGAGAGATCGGCGGTCGCCAGGCCAATGGTATGCCCCATTTTCCCGGCCAGCTGCTGTGCGACGCGGTTAGGGACGTAGTTCAATGCCGCCATAGCCGCTTCCACCTTCAGCCGGGTTTTCTCTGCCACGTTGTCCGCCTGATTGATAACGCGAGAAACGGTCTGATAAGAGACGCCAGCGTGCTGCGCTACGTCATAGAGGGTTGTCGACTTCGTTTTCATCCCGGCTTCCTTATGGTTGCGTGTAGGGCTGCGCTGTTGAGGATGGCGAAATAGTATGTCGGAGCGCGAATAAAGTAAAAACGGGATAGCCGCGAACGGCGGAAATGGGGCGTGGTCTGTTGGTAGAACGGTAAAATTTATCGGCCGCTTTAAAAAAGTGTTTCTATTTCAATCATATAAAAATATGAAAAAACAGGAAATAGTCGGTAGATTTATTCACTGTTGCTTTTTCTTTTGAAATCAAGAATATGGTTTTAGA # Right flank : GGCTTCTTGCTATCCGTATTCTCTGCGCAGAGCATGCANATAAACCGGCTTCTTGCTATCCGTATTCTCTGCGCAGAGCATGCATAAGCCGCTGATATTTTTGTCACATTATTTCTGTGTTATGTACGTCTAATGAGCCGTGTCTGGTGCACGGCATTTAGCGCGAGATATTTATGGCTATAACACAACGAGCAACGCAAAGCGTTACTATGACCGTAGAACGGACCTTACTCAGCCGTGCGCGTAAGGCTGGGATTAATCTCAGTGCCACTCTAACCGCAGCCCTTGATGCTGAACTACGCCAGTACGAAACGAAAAAATGGCAGGGGGGAAAATAGTGAAGCGCTGGAGGCTCTTAACCGCTTTCACGATGAGCACGGTTGTTTCAGCGATGAGTACAGGACATTTTAAAATGCATTTTACTGTATACAGTAACACGGGAAAAGCGTCGTCTATCCTCTGCTGCCTGATGTAAACAGCAATATTATCGGGCAGTTGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCAAGCGGGGTTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.10,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 484622-485321 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQI01000002.1 Mixta tenebrionis strain BIT-26 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 484622 29 100.0 32 ............................. TCTGCATCGTGACACCGTCATTCGAATCAACG 484683 29 100.0 32 ............................. CCGAACACAGATAACACGGTATCTCTGACCGT 484744 29 100.0 32 ............................. GTCTATAACGCTGCGCCATCAACGATAGAAAT 484805 29 100.0 32 ............................. CATAACGCCTCCTTTCCTTTCGTTGTGTTGAT 484866 29 100.0 32 ............................. CTCGTCTCCCAGACCTTCTCCAGAAGAACGAA 484927 29 100.0 32 ............................. CGATCGGTGCAGAACGCGCCGCCAACGTAGGG 484988 29 100.0 32 ............................. GCAATAAACCGTTCCCGTTTTGCCGTGGCGGT 485049 29 100.0 32 ............................. ATATTTCCGTGGAGAGAATAACCGGATCTGTT 485110 29 100.0 32 ............................. CCGTGTTCACTCCGCCCCCTACCAATATAGCG 485171 29 100.0 32 ............................. CCGCCGTATTCTGGCGCCGGTTTTGATTTCTG 485232 29 100.0 32 ............................. GTCTGGCATCCGGAGTTCATCTCTCTGCGGAC 485293 29 89.7 0 .................A.......C.T. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATGCTTTTTATAAATAACGGCTTAGCTAATTCATTATTTCTATTGTGAAAATTCTATCTTTTGAACAGAGCTTTTCAAAATAAATTAAATAACCTAAATGCATTTAATGAAGCTATATCAGGTTTATTTTTTATTGATTAACTTATTAATAATAAAGAATATAACTATTGTTTTCTGGTTTTTTATTTATAGCGTACGTGTAGTTAATTAAGTAAAAGCAAAACAAAGTTGTCATAAAGCCTTTGTTTTTTAATCTGAGAGATGGGTTTGTCAGTGTATGAAATCTGCATGGTAATATTGTCGTATCTGGCGTCATTTTGGTTTTTATTCCCGCTTTACCTTTTGTTTTTAAAAGGTTTTCGGTAGAGCAGAAAAATCAAAAATCAGTTTTTAAAAAGTTATTTTATTTCAATTGTTTAGCGTTCTTTAAAAATGCGGAAAGGTTGGTAGATTTTTAGGTGCTGTTTTTTTATTTATAAATCAGTAATATAATTTTAGA # Right flank : GATATCTGTTTTCTTAGCTTTCCGAATGTTCCAGCGCGATGCCAGCCGGGCGCTTTTTAACCCGCCAGAAATAGATCATCGTCAACATTACCAGCCAGACCAGCCCGGCGATAAGCGCCAAACGCGTTTCTGCTACTGCACCTAATACCCCAATGACCAACACCATAAAAATCAGCGTTACCACCGGCGCTATCGGCCAGCACGGAACCGGGAAGCGGATATTCTCGCGCTCCTGCGCTGTCAAACTGCGGCGCATGGCAAAATGAGACAGCAGAATCATCAGCCATACCCAAAGCGTTGCGAAGGCCGCCAGCGAAGCGATAAGTACAAATACGCGCTCCGGAATCAGGTAATTAAGCACCACGGCGCCCAGCAGCGCTATTGCCATAACAATCACCGTCATCCAGGGCACGCCGTTACTGGCAAGACGCAAAAAGCTTTTTGGCGCCATGCCTTCATTTGCCATGCCGTACATCATGCGCCCGGCACCAAAAATATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 493659-495333 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHQI01000002.1 Mixta tenebrionis strain BIT-26 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493659 29 100.0 32 ............................. TCCCGCAAGAAACCAATCCCCAGCGAATCCCA 493720 29 100.0 32 ............................. CCCTTTTTTGGGCTTTGGTCAGGGAATCAACA 493781 29 100.0 32 ............................. AGCCGGGGTCTTTGTGTGGCATTTTCATTTTC 493842 29 100.0 32 ............................. CTCGCGCCCACCTTCACTCTGATTAGCAACCT 493903 29 100.0 32 ............................. CCACGCGTCTCGTCAACTACCACGTTTTCACC 493964 29 100.0 32 ............................. TAGCTGTCTGCACCATTTGATGCGTGTTTTAG 494025 29 100.0 32 ............................. CGTGAATCGGAATTCGCAATGCAGATATTCGC 494086 29 100.0 32 ............................. GATTACAGCAGGAAGTCCGCCGGGATATTTTT 494147 29 100.0 32 ............................. TTTATGCCGGAGGTCACCCGCACGGCGCAGCG 494208 29 100.0 32 ............................. CATGGTACCACTCTTGTTGACCTGATTTTTTT 494269 29 100.0 32 ............................. TATTTTAGACACGTAGCTACCAAAAACGTATG 494330 29 100.0 32 ............................. ATTCGCTGCGCTGTTGTTGAGTTTATTGCCAT 494391 29 100.0 32 ............................. GCCGGATCGACAATCATGCCGTAGGCGCGCGT 494452 29 100.0 31 ............................. GCGCTGGCGTTTGCCCGCTCACATTCGGCGC 494512 29 100.0 32 ............................. AATCCTTGGCCTAAATTCATTGCAACGGATGG 494573 29 100.0 32 ............................. CCTGCCGGGATAGTGGTGTCCGCCGTCACGCT 494634 29 100.0 32 ............................. GCCCGCCAGTTGGGCTTCACGACTGAGGTTTG 494695 29 100.0 32 ............................. CTGGAGATTGTGCAGGCTGGCGACCGTAACCT 494756 29 100.0 32 ............................. ATTCAATTCCTCGGCCATCGGCAGCGTCACCA 494817 29 100.0 32 ............................. GCAGATAACAAAACCTGGCTGGAGCGTATCCG 494878 29 100.0 32 ............................. CTTTTGGATAAATATCAACAATATACGAGAGG 494939 29 100.0 32 ............................. CCTGGTGACTCAACTGATTATTTGATACCTCA 495000 29 100.0 32 ............................. TAACTCCAGATCGCAACCAGATAGCAATTTAT 495061 29 100.0 32 ............................. CCCTGTTTCCTCTGACAGAAGATCGATCACAT 495122 29 100.0 32 ............................. ATGACTTGACGCTGAAGCCGTTGAGTACCTGG 495183 29 100.0 32 ............................. CGTTGCTAACTCCCTGAATGAATACGATATTA 495244 29 100.0 32 ............................. AATGCGGTTGCAATGAAAAACAAATAATTGAA 495305 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGGCGTGATGGTAAGGATGCGATCGTCGCGCAGGACAAGATCGTGGTTTTCCAGCATGCCATAGGGTTTGGGACGAGTAGGATCGAGTGTCGCTATTTTGATATTCCGCCAGATAATATCGGTAGGTAACAGTTGCACAATGATATCTTCCAGTTGTCATGTGTTGTATATACATTTATTGGTAGCGGAAGAGTTCTGTCAATAAAACCCTGCGATGATGTTATGTCTTTGTGATGGACAACATTGCCAGACATTAAGGAGCCAGGTGATTTGTGGAAAAAAGCAGCGGATTAATGTGGGTTGTATCAAAAAGATGGAGCGATTTTTTTCATAACATCATGGGGTTAAACACCAGTAGTTTGGTAAAAGCTAAAAAATAATTTGTCTTGGTTTTAAATTTTTTTAATTTCAGTGAGTTACAGCTCTTTAAAAATCGAAAAAAGTTGGTGGAATTTTTTGTGCTTTTTTTTTTGTTATAAATCAATCGTATAATTTTAGA # Right flank : GCGCCCCCGCGACGAATCCAGCATTCTCTTCGATCTGTAAAACATGCCCGCTGCGGCGGGCGAAATTCCATTCACACCAGCATAGTAATCCATGTTGCAGCCAGGGCTATAGTGCGTTATGGTGTTTACATAATGTGAACGCCTGAACGGAATCACTTAATGCACGTCATTTCAAAAGAGCCATTTGAGCAAGCGGCGCGGTCATTTCCTAACGATGCTACGGCCATCAAGGCACTGTATCGTCTGGTACGCGAAACAGACTTCAAAACGCCCGAAGAACTGCGCGCCGCCGTGCCAAGCCTGGACAATTTTAAGTACCGTAAAAAATGGTGGGTTTTAGATGTAGGGGGAAGCAATTTGCGAGTGATCGCCTACATCAACTTCGTGAATAAGCGCTTCTACGTGAAGCACATCGCCACCCACACTGAATACGATAAGCTGACTCGCTACTATCGGGAGAACAAAGAATGATCGCCGACATCACTAAAGCTACCGAAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //