Array 1 93122-91841 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ984451.1 Comamonas testosteroni strain SWCO2 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 93121 28 100.0 32 ............................ ATTTCCTGCTGCAGACGTGCGGTGACCTGATC 93061 28 100.0 32 ............................ AGCCTGAGCTACCGGACACGTAATTGCTGGAT 93001 28 100.0 32 ............................ ATTCAGGCCTGAGCGCACCCACACCCATAGGA 92941 28 100.0 32 ............................ ACAGCGTGGACCATGGCGGCCCCGGCAAGCCC 92881 28 100.0 32 ............................ AACTTGTAGCAGACAGCTTCGAGCGCATCGTT 92821 28 100.0 32 ............................ AGCGGGTCGACTTCAAACACGTCGCTGCAGAA 92761 28 100.0 32 ............................ AGCGCTCAACCCGCTGCTGTTGATCGTAATGC 92701 28 100.0 32 ............................ AATGGCGGGACTCCGGCTATAAGGCCGAGTAC 92641 28 100.0 32 ............................ TTGGCAGGTTTTGGCATCACAGACGGCGCACT 92581 28 100.0 32 ............................ TTTCCGTATCGCAGGTAAGTCGCAACCAAGTC 92521 28 100.0 32 ............................ GTGGCTTCTGCGCTCAATCCATCATCGACCTT 92461 28 100.0 32 ............................ ATAGACGCCAGATGGTCCCTGTATGCGATCGC 92401 28 100.0 32 ............................ ATTTTTGAGGTCCAGCAGCGCCTTGCCATAGC 92341 28 96.4 32 .............T.............. AGTCCAGCCAGGACGGCAGCGCAGCCTCGGCC 92281 28 96.4 32 .............T.............. TGCAAACATGGACAGCAAGCAGGCGCGCGTGA 92221 28 96.4 32 .............T.............. TGCCGCTGGTATGAGATGCGTCACCCGAAAAC 92161 28 96.4 33 .............T.............. CAGCCGCACCAAAACACTGGTGTGTTTATCCAT 92100 28 96.4 32 .............T.............. ATAACGCCTACTTTTTGGACAACCCACTCCGA 92040 28 96.4 32 .............T.............. ACGAGCGAGCCACAAAAGCCCGCCAGCAACAG 91980 28 96.4 33 .............T.............. AATCCACAGGGGGAGTGCGCAGCGCCCGTGTGA 91919 28 100.0 23 ............................ GGCCCTGCTGGCCCATCCGGTGA Deletion [91869] 91868 28 89.3 0 ..........A..........G..A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : AGCCAGTACGGGGTTGCGGGCTAACTTGCACTCTTTAGGGCGAAGACCTCGCTGCCAGGCCATCTCATCAGCCTTCGCTGCGCGATAGCAAATTTTGCCGCCGTTGCGATGGAGTTCACGGCTGATAGTGGATGCCGGTCGTTTCAAGCGCCTGGCAATGCAACGGATAGATTCACCCGCTGCTAGCGCTCGGGAGATTTCTTCTCGATCGACTAGAGACAGTGCCACGCGAGATCGATGTCTCACAGGTGGTCGAATCCCACCCGTTGAACTCAGTATGTTGTAGATAGAGCTGTGCGGCCGGTCAAACAGCTTGCCGATCTCATGCAAGGTATCGCCAGCTTGCCAGCGATCCCACATCAGTGCTTTCTGAGCTTCGGTGTAGTAAATCCGCGGTCTTTGCTTCATGCCAACACTCCTTGCGCCAGTGGCAATCATTGTGTTGCATTGACCAGTTGAATCCACAAACACATGCGGTCGTATTCGCTGTAGCGGGTGGG # Right flank : ACCAGCTTACGCCTCGGCTGTGTGCGGGCTCGCATTGCTAATGCAAAGGAAAAGGCGAGAACGAGACCTGAAAGTTGGCAAGTGCATCAGCTCAAATGCTTTGAGACTGCTGGTTCTTCAAAGTTGTCCGTTGCTGCCTGCGTCCCATCATCAAACACCAGCACACGCTCTGGCCAGCGCATGGCGGCGAGTTTGCTGCGTTCGCTGGGGTCTTCGCCGCGCAGGCGGTTGAGCCAGCGGGCGCCGACGGAGTAGTCCACGCAGAACACGTTGTTGCGTTGACCGTGCCAGGAAAGCGGCGCGGTGCCGCCGAACAGGTTTTCAAACTGCGAGCCGTGGGCGGGTGCATCGCTGGCGCGCAGGCGGCGCCAATAGTGGCCGACGATGACGGCGGGCTCTTCAGCGTATTCGTTCCACCAGGCCACGCGTTCGACAAAGCGCCATTTGCCGCCGGCATAGAAGGGGTTGCGGCATTCGCGCTCCACGCCGGTGGTCAGTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 100054-94382 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ984451.1 Comamonas testosteroni strain SWCO2 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100053 28 100.0 32 ............................ GTTCACGCCACCAGGCCACGACACCACGACGA 99993 28 100.0 32 ............................ TTGAGGAATTCATCATCACGACAGAAGAAGCC 99933 28 100.0 32 ............................ ATGCGTGGCATTCAGGCCAAGCCCAGCACGAA 99873 28 100.0 32 ............................ TTGCCCTGATAAAGAAAAAGCCCGCATTTCGC 99813 28 100.0 32 ............................ ATGGTGTGTAGTGATGGTGCCGGACGACAGTG 99753 28 100.0 32 ............................ ATCCCTGCACTTACAGCCATCTCCATCAATTC 99693 28 100.0 32 ............................ TTGACCATCCCGCAATACAACACCGTTACCAG 99633 28 100.0 32 ............................ TAGAGCGCGCGGCGGTGGAGTGTGAAGAATTC 99573 28 100.0 32 ............................ AGACCAAATCCGCGAAGCACTGAAGCCAGTTG 99513 28 100.0 32 ............................ ATGACGAAGAATGAATTGATGGAGATGGCTGT 99453 28 100.0 32 ............................ AACGCCTATGGCTTCGAGTTGGGATTCGGCTT 99393 28 100.0 32 ............................ AAGGCCAGTTACAAGCAGCCGTGGGCCCGTGG 99333 27 96.4 32 ................-........... TTGCTAAACCAGCATCCGCGTGTAGAACGCCA 99274 28 100.0 33 ............................ CACGTGTAGTAGTTTGGGAATCCTTCGGATGCT 99213 28 100.0 32 ............................ TTTATCGCCTTGCTATACGCCACGCTCTGGCT 99153 28 100.0 32 ............................ AGTTGTCCAGACGCCTGCCGGGAATCTAGCCA 99093 28 100.0 32 ............................ ATGGGTATTAATGTAGTCTCAATTTGAGACTT 99033 28 100.0 32 ............................ GCCAAGGTCACAACGGCGGAGCAAGCTCTGTC 98973 28 100.0 33 ............................ AAGCTGCGGGAGGTGGCTAGGAAGAAGATGACC 98912 28 100.0 32 ............................ GGCACCGGCTTTATGAATCCCATCAACATCAC 98852 28 100.0 32 ............................ TATCTGTGTAGCGTAGTGGTTACTGAGTTCGC 98792 28 100.0 32 ............................ AAAGAAAACGCCATTGCACACGCTAAGGCTAT 98732 28 100.0 32 ............................ TAGTCGAGCAAGAGGCGCTGGAGAGGGCGGCA 98672 28 100.0 32 ............................ GTTGGCGCAATGCCCTCGCCGCGTGCAGAGAG 98612 28 100.0 32 ............................ ATCCCAGCGCATGCCCAGCACCACATCGCCCG 98552 28 100.0 32 ............................ GCAGGTGACGATGTAGCGGGTCAGCATGGCTT 98492 28 100.0 32 ............................ GGGTGACGTGATCGTCAGTGCACCAGCGTCAG 98432 28 100.0 32 ............................ TTGCGTGTTTCGCCGCTGGCTGGTGGGTTTGT 98372 28 100.0 32 ............................ TTGGCGGCTACTGGGGCTGCTTTGTTGCCACG 98312 28 100.0 32 ............................ GCAAGCGCATGGATGAACCACGGTAGATCAAT 98252 28 100.0 32 ............................ TCGCGCCTCCTGTAAAAGCGCAATTCGCGCAT 98192 28 100.0 32 ............................ ACCAGATGATCAGGTGGCCGCCTTCTTGGATG 98132 28 100.0 32 ............................ TGCGCGTCACCGTGCAAGCCCCGCTGGCCCAG 98072 28 100.0 32 ............................ AATGAGCTGGTGCGGTTTGCATGTGCACACGT 98012 28 100.0 32 ............................ TTGGTGCCAATCGCTGTCAACAGCGCGGACTG 97952 28 100.0 32 ............................ GATATTCGTGTGCCGGCATACGGCACGCCCTA 97892 28 100.0 32 ............................ ATCACGCGGGCGCGGTGGCGCTGTGCGGGGGT 97832 28 100.0 32 ............................ TGCTGCCTGGGGCGCAGGCACTGTAATGTCGC 97772 28 100.0 32 ............................ TGGAGGCTTCAAGGGCATTGCTGTCACAACGC 97712 28 100.0 32 ............................ ACGAAGCCCGCGCAGGCGGCACCACCACCTGG 97652 28 100.0 32 ............................ GTGCTGAGCTGCTTGCCCTGCGGTGTATCGTA 97592 28 100.0 32 ............................ AATTCTGGTGCTGGCTGTACGCACTCAAATCA 97532 28 100.0 32 ............................ ACAAGGAATGGCTACAGCACGCGCTAGAAGAG 97472 28 100.0 32 ............................ AATAACAACGATACGCCCCCAAATATCTAGGC 97412 28 100.0 32 ............................ GGGCATCAGGGCAGGAGCCTGAAAGCGCGGCC 97352 28 100.0 32 ............................ TTGCCATTCCTCAGACCTCCGCCGAAATATTC 97292 28 100.0 32 ............................ AAGGTGATTGGCGATGCGATTAAGAAAGATCA 97232 28 100.0 32 ............................ GATGGCTACACGCAGCCGATTGTCTCTATGTC 97172 28 100.0 32 ............................ GAAGTCGTCTTGGACGCCTTGGATAGTTTTTG 97112 28 100.0 32 ............................ TGTTTGCTCTCATAGCTCTGTGCCTGTGGGGC 97052 28 100.0 32 ............................ TGGCAGAACATGCTGAGGCTGGCTGTGCGCCG 96992 28 100.0 32 ............................ CAGCCCTGCGTGGGATTTGCGACGTCCACGAT 96932 28 100.0 32 ............................ TGACCATGGCCCGCTTCGACGGGCTTTTTTTG 96872 28 100.0 32 ............................ GCTCGGTGTAGCCGATCTGATCGAGCGTGGTC 96812 28 100.0 32 ............................ CAGCGCGCTATCGACAAGCCCGTAGCCGCCAG 96752 28 100.0 32 ............................ TGAAGTGCTCAAGCTCGAATCCGCAATCTCAG 96692 28 100.0 32 ............................ AGTCACCCGTTTTCGGGTGACGCATCTCATAC 96632 28 100.0 32 ............................ GCTTGCAGGGTGCGAGGTGCAATCGCATATTG 96572 28 100.0 32 ............................ TGTCCACCAGTAGCCAGCAGGGCGCGAAGTTC 96512 28 100.0 32 ............................ TCACCACCTTGCTTGGCGATATCGCCCAGCCC 96452 28 100.0 32 ............................ TGATTGCATCGACTGTGGGCGCCGCCTGGGCC 96392 28 100.0 33 ............................ AGCAGGGAGGGCTGGCATGAGTGCAAAACGATC 96331 28 100.0 32 ............................ CACTGCTGGCGCGGCCTTGGCTGTCTCGATCA 96271 28 100.0 32 ............................ GCGCAGCTGCCCACGGCAAGTGTGGTGCGGCG 96211 28 100.0 33 ............................ CTGCGAACATGGATAGCAAGCAGGCCCGCGTGA 96150 28 100.0 33 ............................ TGGCAAACGCGCTTGAAAACAGTGTGGATCGGT 96089 28 100.0 32 ............................ ATCAATCTTGCCGGAAATGCGGTGTCGGTTCC 96029 28 100.0 32 ............................ TGCTGTGCATCCAGTTCTCGCACACGCTTGAA 95969 28 100.0 32 ............................ AAGTACACCAAGGCCGGTGAGAGCCAGTCTGC 95909 28 100.0 32 ............................ AGCAACGCCAAGGCGATCAGCGCTTTGGATCG 95849 28 100.0 32 ............................ CTGCAGCAGTGCTGCGAAGATCAAGCAACAAC 95789 28 100.0 32 ............................ AAGTCACGGGCTTCATTGCCGCGTTTAGCCTC 95729 28 100.0 32 ............................ AAAGATATGGGGCGAGCAATGCGCCGTCAGGC 95669 28 100.0 32 ............................ TGTCACCTTGACGGCAATCTGGCGAGGGCTAC 95609 28 100.0 32 ............................ TTGAGCACATCGCCGGTTTCCGGCGAATACAG 95549 28 100.0 32 ............................ TGCGCCGGGTGTGGGCAGGGGCTGGGTGACAG 95489 28 100.0 32 ............................ AGCAGCGCCACCGGGTTGAACACCGGCGCGGG 95429 28 100.0 32 ............................ TCAACTCGCAGATCAGTCGGCGTTATCTGCTG 95369 28 100.0 32 ............................ GCGCCCGCATGCTGCAGCGCGCATTCAGCGCA 95309 28 100.0 32 ............................ AGGAGTTTTGAGTAGTTCATAAGCGGGCCTCC 95249 28 100.0 32 ............................ TTGTTCTGCGCTGCGCGCTGCGTGACTGTCAC 95189 28 100.0 32 ............................ GCAGCCGGCGCATGTCTTTTCTGCGGTGATGG 95129 28 100.0 32 ............................ AAGGCGTAGTTGACTTCCCACTCATTGGCGTC 95069 28 100.0 32 ............................ CTCGATACAAAGCTCTCGGCAACAGTTGGGCT 95009 28 100.0 32 ............................ ATTTCGCGCAGCGCGTCCAGCTCGTAAAAGTG 94949 28 100.0 32 ............................ AGCACGGGGCTGGCGTGCTAGCCGTACATGCG 94889 28 100.0 32 ............................ GCTGCAGGCTTCATCGGTGCCGGGAAAGCCGC 94829 28 100.0 32 ............................ CACGAGGAAAGTGATACAAAAAGCAAGCGAGT 94769 28 100.0 32 ............................ AAGTCTGCCGGCGGCGAGGTCTACCAGGCCGA 94709 28 100.0 32 ............................ AGCCGGATACTGTGAACTCACGGCTTGAAGGG 94649 28 100.0 32 ............................ AAAGAAAAAGCCCCGCGTCGCAGGGCTTCGTG 94589 28 100.0 32 ............................ GTAGCGGCTTCTGGCGGGGCTTTCTTCAGGGG 94529 28 100.0 32 ............................ AAAGACGCGGAAGCCTTCAGCCACGGCGGCAA 94469 28 100.0 32 ............................ AATGTCGTAGCCCGCAGTTTTCATTTCCTCGC 94409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 95 28 100.0 32 GTTCGCTGCCGCACAGGCAGCTCAGAAA # Left flank : CCGCGCTGGCAGGACTGATGGAGCAAGGCTGGCTTAAAGGTATGCGCGACCACGTGCATCTGTCTGAGTTGGCACAGGTGCCATCGGGCACGTCACATCGCTTGGTGCAGCGCCGTCAGTTCAAAACCAACGCCGATCGTCTGCGTCGCCGCCGCATGGCACGAAAAGGTGAAACCGCCGAGCAAGCTGCAGCAGCCATCCCCGACGCGGTAGAACGCAGGCCCAATCTGCCTTTTGCGCAACTGCGCAGCAGCAGCACCGGTCAGCCGTTTTGCTTGTTTGTGGAGCACGGTGTGCTGCAGCCTGATGCCGTTGTTGGCAGCTTCAATACCTATGGGTTGAGCCAAGGCGGCTCCATACCTTGGTTCTAACCCTTTTTCTGGCGCTCATTGCAGTGCCTTGAAAAATCAATGACTTAGCCTGCATCTCAAAAAAGGGGTGTCGGGCTAATTTTGTCATTTGTTCTTTTAAAATCAGCTATTTGGAGGATTTACAATCCA # Right flank : TGTGGATTCAACCGATCGATGCAACACATTCGTTAAACATCTCAGCCGGGGTTCTGTACCCCAAGGTTTTTCTGGGCCGCTCGTTTAATTTTCTAGCAATTTCATTCAAAGCATTCTGCGAGTAGCCCGAGATGTCGATGCCCTTGGGCATGTACTGCCTGAGCAGCCCATTGGTGTTCTCGTTCGTCCCGCGCTGCCATGGGTTTTGTGGATCACAGAAGTAGACTTGGATGTCAGTGGCCACAGTGAATCGCTTGTGCCCCGCCATCTCTGACCCTCTATCCCAGGTCAAGGAACGATAGAGCTCCTGTGGCAAGGTCTGTGCATGCCGGGCCAACGCCGCAGCCACGGTATAGGAGTCTTTGTCCACCAGCTTGACCAGCATCAGGTAGCGTGTGTGGCGCTCCACCAGCGTTGCAATCTGGCTGTAGGCATCGCCGAACAACAGATCACCTTCCCAGTGACCTGGAACCGCTCGATCCTCTATGCAGGCTGGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //