Array 1 9016-9837 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWK01000106.1 Escherichia coli strain A205 NODE_17_length_102463_cov_80.9397, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9016 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9077 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9138 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9199 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9260 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9321 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9382 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9443 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9504 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9565 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 9626 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 9687 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 9748 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 9809 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTAGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18352-16736 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRWK01000116.1 Escherichia coli strain A205 NODE_11_length_140019_cov_85.3419, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18351 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 18290 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 18229 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 18168 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 18107 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 18046 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 17985 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 17924 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 17863 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 17802 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 17741 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 17680 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 17619 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 17558 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 17497 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17435 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 17374 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 17313 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 17252 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 17191 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17130 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 17069 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 17008 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 16947 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 16886 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16825 29 96.6 32 .A........................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16764 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //