Array 1 16220-13446 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTLV01000232.1 Pseudomonas oleovorans strain YKJ NODE_76_length_16771_cov_41.9389_ID_157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16219 29 100.0 32 ............................. TCATACTTAGGATCAACCTCTGCCACAGTTGT 16158 29 100.0 32 ............................. ACGGGAGAGATAACCGAGCGCTACGAACTGCG 16097 29 100.0 32 ............................. TTGCCGGTCTAAACAATGGCGGCAGTGCTGCC 16036 29 100.0 32 ............................. ACCACGATCGCAATGAACATCGCCGAGGATGT 15975 29 100.0 32 ............................. AAGGGGCTGGGCTGTCAACGTAATTGGCACCA 15914 29 100.0 32 ............................. TCCTCAAGCCTCGCCTTGGTTCTTGTATCGGT 15853 29 100.0 32 ............................. AGTGAGGGCAACCAACAGGCGACCAAGGCCGC 15792 29 100.0 32 ............................. AACATGTGACCGCTGACAATTGGTCGAAACTT 15731 29 100.0 32 ............................. TTTGCTCGCGCGGGATCGCTCGGCCTGCTGAA 15670 29 100.0 32 ............................. TCGGAGATATGGGTTATCTGGAACCCGCGCAA 15609 29 100.0 32 ............................. TCCTCTGGTCATCCTTCCTGGCCGTCAGTGGC 15548 29 100.0 32 ............................. CGCTGAGCCTCAGCCTTGGTATTTAGCGTCTT 15487 29 100.0 32 ............................. CCTTGCATGGTTGATTTTGCGGGCTACCGGTT 15426 29 100.0 32 ............................. CCCTTGAATTGACACAAAATAGACCCGCAGTG 15365 29 100.0 32 ............................. GCGCGCGCGGGCCGCTTCAAGGTGATTCGCAA 15304 29 100.0 32 ............................. GCCGCGCGGGTCGCCGAGTCGCTCGAGAACGA 15243 29 100.0 32 ............................. GTCACGTCCAGCGTGTACTGCCACTCGCCCGT 15182 29 100.0 32 ............................. GCGCAGGGTATGCACCCTGTCTATGCCGAGCG 15121 29 100.0 32 ............................. GCCCGCAATGCCGACCTTGCCGCTTGCGACTA 15060 29 100.0 32 ............................. TTGTCACATGCCTCCTGCCAGCATCCTGCCGC 14999 29 100.0 32 ............................. CAATGTGCGCGGTTACCTGCTAATGAGCCTGT 14938 29 100.0 32 ............................. CCTCCGGTTGATCTGGTGGCTCGGATGCATTG 14877 29 100.0 32 ............................. GCTGGCGTCTGGAACAGTGATCATGGGGTTTC 14816 29 100.0 32 ............................. CACCTCGCTAGGCTGGGTGCAGTAGTAAGAGA 14755 29 100.0 32 ............................. TCCACTATCAACCTCGAGCATATATACGTCTC 14694 29 100.0 32 ............................. TCCCTTGCACCCATAGCCGACCTGGCGGCCAG 14633 29 100.0 32 ............................. GCTTCTTGCTGGGCTTCCTGGCCGACCCAGCG 14572 29 100.0 32 ............................. TGAGCATATTGACAGCATCAGGAATGCCAAAA 14511 29 100.0 32 ............................. TGTGGGAAGCAGCTGAGGTGAGCAAGTCGAGT 14450 29 100.0 32 ............................. CCCGCTAACTACTGGAGTAAGTCCCATGCAAA 14389 29 100.0 32 ............................. GTGCCGGCCGCCAGCTCAAGCTTGGCGCCTGT 14328 29 100.0 32 ............................. CTGACGCAGGAACTCGGGGTGCTTCAGATACG 14267 29 100.0 32 ............................. GTATTCCGTGGGGTGTTCATCACCCTGGCGGA 14206 29 100.0 32 ............................. CCGGGGTTTTTCTTTGTGGGCCAGCCGGGCGG 14145 29 100.0 32 ............................. TGTAATCGGTGCTGTCCTCTTCTTGAGTGGGG 14084 29 100.0 32 ............................. CGCGCCCTGTAATCGGGCTGTTGTCAATAAAG 14023 29 100.0 32 ............................. GCGCAGTACCAAGCAATGACACGAGAACTAAA 13962 29 100.0 32 ............................. CTCCCAATGTGGCCAAGTAAACGGACAAATGC 13901 29 100.0 32 ............................. CCTTCGTGTATCTCACGCTGTCTTTCTTCGGC 13840 29 100.0 32 ............................. ACGGCTGCCGGCTTCAGCGGCAAAAACATTGA 13779 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 13718 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 13657 29 96.6 32 ...C......................... GTGGCGGCGCCACGGTGATCAGGCGCAGGGTG 13596 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 13535 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 13474 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : TGGCCCCGTTCACCGGCGAGCAACGGCGCGACATGCTGGAGCTACTGGACGACCGTTACGGCCAGCGCTCGACCATCGTCACCAGCCAGATGCCGGTGGACAACTGGCACGAACTGATCGGCGATCCGACCCTGGCCGATGCCATCCTCGACCGCCTGGTGCACAACGCTTATCGGATCAATCTGAAGGGTGAATCAATGCGCAAACGGACGCAGAAATTGACGACGCCAGCCAACCCGGACTAACAATGCCACCCCTGCGTCGCTGCGCTCCGACTGCCTGTCCGAATGAGCGTGGAACAGGTGTCCGGATCAGCGTGGGCTGAGTGTCCGAATGGCGTGGAATCCGCACTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2922-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTLV01000160.1 Pseudomonas oleovorans strain YKJ NODE_87_length_11684_cov_47.6312_ID_175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2921 32 100.0 35 ................................ TCTTGATCGCTTGGTAAGAGCTGCCGAAAGAACAG 2854 32 100.0 34 ................................ AAATGCCGCATCGATGTAGTTACTGCCTATCTGT 2788 32 100.0 34 ................................ ACTTCCTCGATGTTGAACTGATAGCCGATGGCTG 2722 32 100.0 35 ................................ ACGAATGAGCAGATCGAAGTGGCGCGTAACGTCAT 2655 32 100.0 36 ................................ ATGTATGAGCTGACCCTGAAGGGCGACAGCACCAAG 2587 32 100.0 35 ................................ CCAATGGCGGGCGCGTGCCTGTCGATACCGGTAAC 2520 32 100.0 35 ................................ AAGCCGAACGACGTTGTTCGTGTATTGCGCAGCGA 2453 32 100.0 34 ................................ ACCTGCAGCAGCTTGGCCTGGATCGGCTCCAGTT 2387 32 100.0 36 ................................ ATAAAGGGTCGTGGTGAGGTTGACATTATTCCCGAC 2319 32 100.0 34 ................................ GTCTGCGCCATCCCATGTGCCGGTAGTAGTGAAC 2253 32 100.0 33 ................................ ATCGATGCCCAGCTAAACGGCATTCAGGCGCTC 2188 32 100.0 33 ................................ ATCAAGCGCCGCATACCAATGCGCCACGCTCTT 2123 32 100.0 33 ................................ TATTGAGGCAGTGGTAACAAGTAGCTGTGTGTC 2058 32 100.0 37 ................................ CTGTGTAGTCAATCTCTGCACGCCCCCACCCTTGAAG 1989 32 100.0 36 ................................ ATTCGAGCTATTCGCAAGGTGGCAGGAACCGAAACG 1921 32 100.0 34 ................................ CATGACCTGCGGCATGAGGCCACGTCCCGCCTGT 1855 32 100.0 35 ................................ AAACGCGCCTACACCATCGTCGACCGCATCGGCAC 1788 32 100.0 34 ................................ ACGGGTTAGACGATGCGCTGACTCGCGCTGGTAA 1722 32 100.0 34 ................................ ACGTTCAACATTACCAGCGGCGAAGGCGGCCAGG 1656 32 100.0 35 ................................ TTCTGCCTGGGGTGCGATATGCCGCACACCATCCA 1589 32 100.0 36 ................................ GACAAGCCTCGCCCGCTCTACGGTCTCGACAAGCTG 1521 32 100.0 35 ................................ ATCGCGCTCAAACTCAACTGACATGTGCATAGCCA 1454 32 100.0 34 ................................ ATTATTTCCGCACTGTGACAGTACGAAGCCCGCC 1388 32 100.0 35 ................................ GTTAGTTCGCGCGAAAAATGCGAGCCGGAGGAAGG 1321 32 100.0 35 ................................ TCAGCAAGCTCTTTCGGCTTGATATCGCGCTTAGC 1254 32 100.0 34 ................................ CATGAGTCGCGCCAGTTGTTCGCGCTGGCTATCG 1188 32 100.0 37 ................................ TGCGTAGTAGCAAGGCTGGCTGCCACCGTCTAAGGCG 1119 32 100.0 37 ................................ GCTACGGTAATTGTTGAATGGGCGGATGCTGCTGGAG 1050 32 100.0 35 ................................ CTGAGCACTGCCTTGCGCACTGTCGGCAGCCGGTC 983 32 100.0 37 ................................ TGCGTAGTAGCAAGGCTGGCTGCCACCGTCTAAGGCG 914 32 100.0 37 ................................ GCTACGGTAATTGTTGAATGGGCGGATGCTGCTGGAG 845 32 100.0 35 ................................ CTGAGCACTGCCTTGCGCACTGTCGGCAGCCGGTC 778 32 100.0 35 ................................ AATGCCGTACGCTCTCAGATGGCCGCATTGGGCGA 711 32 100.0 34 ................................ AACAAGGGGCGGCCGACTGCGCAGCATATCAAGC 645 32 100.0 36 ................................ ACGTTCGCTGGATCGGCCGGCGCATTCAGCTGCAGC 577 32 100.0 36 ................................ TGCGCGTAGTTGTTTGATCAGTGCCTGGCTATCCAT 509 32 100.0 35 ................................ TATTGTGTGAGGCGCGCAATGCTAATCCCAACCAA 442 32 100.0 33 ................................ AATGGCTATCGCCTTGAGGGTGGCCGCCTGCTG 377 32 100.0 35 ................................ AGCTCAATAGACCAGGCGATTGCAGCACGCAAGGA 310 32 100.0 34 ................................ TGGTACTTGTACAAGAGCGGCGTTGACGAACAGG 244 32 84.4 0 .............T........A..GCC.... | G,C [214,220] ========== ====== ====== ====== ================================ ===================================== ================== 41 32 99.6 35 GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Left flank : TACCCACCCTTCATCTGGAAGTGAGCCACGCCCATGATGGTTCTGGTGAGTTATGACGTAAGCACCGAAGGCGACGGCGCCCGCCGCCTGCGCCGCGTCGCCCGCGCCTGCCTCGACTACGGCCAGCGCGCCCAGTACTCGGTGTTCGAGATCGAAGTCGATCCGGCGCAATGGGCCATGCTCAAGAGCCGGCTGTGCGACCTGATTGACCCGGACGTCGACAGCCTGCGCTTCTACTTTCTCGGCAGTAACTGGCAGCGCCGTGTCGAACACGTCGGCGCCAAACCCGTACTCGACCTGAATGGCCCGCTGATTCTCTGAATTGCGAACCCCAAGCAGCCGACAAAACCCCGGCAGGTTCGCACGCTCTTTAAAAATACGGATGTTCTGATTTTGTGCGTTGGTACTGTTCTCAAGCAATCTGGCTAATGTGTCTTAACTTGCAGGTTCGCATAAATTAAGAATTTTCACTGGGCAGATCAGTGAGTTATAAGTGGGGG # Right flank : CCCATGACCGTTCGTCGGTTTACATGTTGCCAGCTAGGGCCCTCGTACCTGAGTGCCTGCCGTGACCCTACAGGCAGGGTACTTTCAGTTTTAGGGGTATGTTTAGGGGTATGTCTCTTTGCTTGCTCTGGCTGATCGACCGGTTTTATTTTCCATCGAAAGGTTAAAACCACCGGCTTTCAGCCGGTGAGCTTTAGCGCCACCATGCGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCTCGCGGGCGTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 15482-14110 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTLV01000131.1 Pseudomonas oleovorans strain YKJ NODE_8_length_124732_cov_41.7449_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15481 29 100.0 32 ............................. TTCGACAGTGCGCCACCGGTTTCCTCTTTGGC 15420 29 100.0 32 ............................. CCAGGTCTTGAAACAGTTGATGGACGTTGACC 15359 29 96.6 32 ............................A CTGGCCGTCAGTACTCCAAGGGTGATTGCGAA 15298 29 100.0 33 ............................. GCCGTATGCGTGACTTCCTCGACCTGTGCGTCC 15236 29 100.0 32 ............................. ACGCGATTCTTTAGCGCCCCAATAGGCAGTCG 15175 29 100.0 32 ............................. GATGCCAATGCCAACAGTTGGATAACCCTTCA 15114 29 100.0 32 ............................. CAATCAGCACCTGGAAGGGAGCGGCTGCCGTT 15053 29 100.0 32 ............................. TCCGGTGCCCGGCGTGCGGGACACGCTGTCGA 14992 29 100.0 32 ............................. GTAGTCGCACGATCAACGAAGCTAGGAACGTC 14931 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 14870 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 14809 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 14748 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 14687 29 100.0 32 ............................. GCATTGCCCTTCGCTGCTGCGAGGCTTTGCGT 14626 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 14565 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 14504 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 14443 29 100.0 32 ............................. TTACGAGGCCTGCCGCGCACAGGCCTACAGAC 14382 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 14321 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 14260 29 100.0 32 ............................. CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 14199 29 100.0 32 ............................. GGCGTAGGCGAGATCCTGATTCGCAAGAACAG 14138 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAAGCGCCGGTCAACTCGATCTGGGAAGGCTCGGGCAACGTGCAATGCCTGGACGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCGTATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGCCGTCTTTGGGCCAAGAGTGGCGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGACTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCAGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //