Array 1 109815-107894 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTB01000002.1 Salmonella enterica strain GJ0703 Contig_2_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109814 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 109753 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 109692 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 109631 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 109570 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 109509 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 109448 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 109387 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 109326 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 109265 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109204 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 109143 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 109082 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 109021 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 108960 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 108899 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 108838 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 108777 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 108716 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 108655 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 108594 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 108533 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 108472 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 108411 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 108350 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 108289 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 108228 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 108167 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 108106 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 108045 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 107984 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 107923 29 93.1 0 A...........T................ | A [107896] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127857-126426 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTB01000002.1 Salmonella enterica strain GJ0703 Contig_2_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127856 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 127795 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 127734 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 127673 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 127612 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 127551 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 127490 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 127429 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 127368 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 127307 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 127246 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 127185 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 127124 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 127063 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 127002 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 126941 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 126880 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 126819 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 126758 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 126697 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 126636 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 126575 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 126514 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 126453 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //