Array 1 342121-342347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000045.1 Siphonobacter sp. BAB-5405 BAB_5405_c45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 342121 31 96.8 35 G.............................. GTGTTTAAAACGTAGCGAATCCGTAGCTTCAGCGT 342187 31 100.0 34 ............................... TGTCGTCATTGACAAGTACGAAGGTTAGGATAAG 342252 31 100.0 34 ............................... GGCAAAACGTATCGTAATCAACGAGCTCTTTAAA 342317 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 AATCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : TCTTCTTCAAAATCAATAAAAGATGTATGTCATTTTAGTGTACGACATGGGCCAGAAACGCGTGGGCAAGATGTTAAAACTTTGTCGGCGTTACTTAAACTGGATTCAGAACTCGGTTTTTGAGGGTGAGATGACCGACGTACAGTTGAGGGAGTTATTACACGAAGCGAAACGGATCATGAATGAAGAGGAAGACAGCCTAATTTTGTTCAAGAATCGCGACCAGAAGTGGCTGGATAAACAAATCGTCGGTATAGAACGGCAATCAACCGACGATTTTTTGTAAAACGGGATCGTCGATCGAATTACACAGCTCGCTGGCAGTTACCTCTTTCGTGCATTAATTACCCTTCTACTGACATAAATCCCTGATTATCAGAAGTCGTCGATCGACGGGTATTTTCATACCATTGGAGATCGACGATTTTTTGATTTAATTTATAGCAAGTAAGTAGCGTGCAGAAGCCTGAAAAGGCCTTTTTTACACGTTTTTGATTGGG # Right flank : ATTCGACCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 56-283 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000046.1 Siphonobacter sp. BAB-5405 BAB_5405_c46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 56 30 100.0 36 .............................. GTGAATCGGGTGAATCAGGCCCTGTAGCAGGCTGGG 122 30 100.0 36 .............................. AAGAAAGGAGCGATAAATGAGGGGCTTATAAAAATC 188 30 100.0 36 .............................. TAAGTGATTACCCAAATATCTTCATCGGCTACGCCC 254 30 86.7 0 ...................A....CA...C | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 96.7 36 GTCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : CCAGAGTGGAATTGAAATTTGTAGACCGCATACTGACGCTGTGAGGTGTCAGCGGG # Right flank : CTTTAGCAAGGCAGATCAACGCTGACGCAAACCCCTACGGATTGCAACGCAAGTGAGTGAAGTCGTCCATCGAGATTAGGTTGTAATCGTCCTCCAGGCAATCAAACAAAGCCCCACTTCTCACTTGCAGATTACACTACTCCATACGATCAATCACTAACAGAGATTTGGTAAGTCTTCTCTTGACTTCCTTAACGAAACACCCGTTCACTCAACCTGCTGCTTTTCGCTGAGTCAAGTCCTGTCTTTCTTGTAAAATCAAACATTTTTGATCGTATTCGTTAATTAATGCGTACCTTTACGAAATAATAGGTTTCTGCCTTTGCTTTTGCTGACATAGTTTAGGATCATTCTTTCCTCTATCACCAGTTTTCGCTCTCTCAGCTACCGCTTTTTTTGCACTTAAACGGTTTTTCGGGCAGTTGCTGCCAGAGGCCAGATGTTTCGAATTTGCTTCTTTTTCTCACTTGATCCGGTTTTTATAGCCATTGCCTGCCTGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 706-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000215.1 Siphonobacter sp. BAB-5405 BAB_5405_c397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 705 30 100.0 35 .............................. CATGATCCTAACCCAACCCCTGTTTAAAGCCCGCA 640 30 100.0 37 .............................. CAAACCGCTCATCCAGGGTAGACAGCTGCCCATCTAC 573 30 100.0 37 .............................. CATTTTCGGGAGCCTAGTTCGGGACTTGAGTTTTTGG 506 30 96.7 36 .............T................ TTAACGCTCCCACAATTACCAGCATCGTTGCCAATA 440 30 100.0 34 .............................. TATTCCAAGACACCTCGGGTGAGCAGAAGTTCGA 376 30 100.0 36 .............................. AATAAAAGCAGGGGCGAACGTAGCGACGTAGACATC 310 30 100.0 35 .............................. AAGGTGGCCAGGCTGTACTCCCTGATCGTAGTACC 245 30 100.0 36 .............................. AAAGATTGACGAATGTCGGGAGGATAGATGGGGTCT 179 30 100.0 36 .............................. ATGGCTGTGGCTGCCAGGGCAATAGGGCTGCTCAAT 113 30 100.0 38 .............................. GCGTTCAGATAGAAAGGATCCCATTGCTGGGGCGTGGT 45 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : ATCGTACCTAGTTGGAATTGAAATTTGACGAACATGTATTTCAAAGAGGGCACACCCCCGA # Right flank : TCGGTGTCAATTCGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 712-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000216.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 711 30 100.0 35 .............................. GGATTACCGAATAAACGACGAACGGGAAGTTTTAA 646 30 100.0 35 .............................. TTGGGGGCATCCGAAGCGTAATTCAATCGTACCCG 581 30 100.0 35 .............................. GCATGAATTTCCTAAATTGGCCTGAAAAAATCACC 516 30 100.0 35 .............................. TAACTCCCACGGCACCGGCACGGCGGGCAGCACTG 451 30 100.0 36 .............................. CTGGTAGCCGTAGCCGGGCGAATTAAACTCTTCCTC 385 30 100.0 36 .............................. TTTTAACCAACGAAAACACTCTTTATACCATGGGAA 319 30 96.7 35 ........T..................... TGCGAACGTCAGAAAATGTTTTGTCGGTAACAGAA 254 30 100.0 35 .............................. ATGGAACACCTAGTCATGCCCTTTGACGAAGCAGT 189 30 100.0 36 .............................. TTCGTGTTACTTTGAATGGTACTCGCCTCAAATTAG 123 30 100.0 36 .............................. AAGTAGGCATGCTCGTAAAGGTGCATATCGGCGACT 57 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 99.7 36 ATCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : GT # Right flank : TGTCTACTCACTGACTCCCGGCTGTGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 35-326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000219.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 35 30 100.0 36 .............................. ACGGGACCCTGTATGAAAAGGCCATGGCCGCGGGCG 101 30 100.0 35 .............................. TGTATTCGAGTGATGCTGGATTGCTATTGCCTATA 166 30 100.0 35 .............................. TAGCCGCTACGCAGGAAGATGTGTACGATGATTCG 231 30 100.0 36 .............................. AGCTAGACGGAATTATGAGCCGAAGCGAATCCTTCA 297 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : AGAAGCTCCCATTGCGAGGGACGTTCGGCGAAGAG # Right flank : TAAAAAGGAGGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 20-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000234.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c535, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 20 31 100.0 34 ............................... TGTCGTCATTGACAAGTACGAAGGTTAGGATAAG 85 31 100.0 34 ............................... GGCAAAACGTATCGTAATCAACGAGCTCTTTAAA 150 31 100.0 35 ............................... ATTCGACCCTATCAACCGATTACGCAAGGCGGTTG 216 30 93.5 0 G.........-.................... | T [244] ========== ====== ====== ====== =============================== =================================== ================== 4 31 98.4 35 AATCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : GAATCCGTAGCTTCAGCGTA # Right flank : TTGTCAATGCGATTTCCCTTGGTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 324-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000239.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 323 30 100.0 36 .............................. AGGGAAAGGATGGAGTTTAACACAATCTATCCCTAA 257 30 100.0 36 .............................. GAGCAACTTTTCCGCTTCCGTTAAAGGAGGGGGCAT 191 30 100.0 35 .............................. GTTGCAACTTGGTTTACAATAAATCGTTAATTTTT 126 30 100.0 36 .............................. AAATAAGTTTGACCTGGCGTAACCTCTATGAGTTGA 60 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 ATCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : AAATGTCTACTCACTGACTCCCGGCTGTGTGCTCCAAG # Right flank : TTTGTAGACCGCATACTGACGCTGTGAGGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 54-215 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000241.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c613, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54 29 100.0 37 ............................. AAATAAGTTTGACCTGGCGTAACCTCTATGAGTTGAA 120 29 100.0 38 ............................. TAGTAGACTGCAYAMTGACGCTGTGAGGTGTCAGCGGG 187 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 TCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : CAGAGTGGAATTGAAATGTTGCAACTTGGTTTACAATAAATCGTTAATTTTTAT # Right flank : ATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 20-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000245.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c647, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 20 31 100.0 35 ............................... ATGGCTGTGGCTGCCAGGGCAATAGGGCTGCTCAA 86 31 100.0 37 ............................... GCGTTCAGATAGAAAGGATCCCATTGCTGGGGCGTGG 154 31 100.0 35 ............................... CGGTGTCAATTCGGTTAAAAACTCAGTTTGAAAAT 220 31 100.0 35 ............................... CGAAGAAAGATCAGGCTAAAATTATTTTCGATGAG 286 31 96.8 0 G.............................. | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 99.4 36 TGTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : CGGGAGGATAGATGGGGTCT # Right flank : TTCAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000248.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c663, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 29 96.7 35 ............-................. AAAAAAGGGAGGAGAGGAAGGCTATAAAGCCAGGT 65 30 100.0 36 .............................. GTGCCTGAGCCGCTTCAGCTCGAAAGTTTTGGGCCT 131 30 100.0 36 .............................. GTTTTATCGGTATTGAGTCCGGAGCCAGTCACCATT 197 30 100.0 36 .............................. GAGCAATTCATGGTAGGTCTGGGCGGTTTCAGGCTC 263 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : | # Right flank : ACATTACTACG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 34-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000247.1 Siphonobacter sp. BAB-5405 BAB_5405_rep_c661, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 34 30 100.0 36 .............................. AGCTAGACGGAATTATGAGCCGAAGCGAATCCTTCA 100 30 100.0 35 .............................. AAAAAAGGGAGGAGAGGAAGGCTATAAAGCCAGGT 165 30 100.0 36 .............................. GTGCCTGAGCCGCTTCAGCTCGAAAGTTTTGGGCCT 231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : GCCGCTACGCAGGAAGATGTGTACGATGATTCGG # Right flank : GTTTTATCGGTATTGAGTCCGGAGCCAGTCACCATTGTCTTAATCGTACCTAGTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 678-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000018.1 Siphonobacter sp. BAB-5405 BAB_5405_c18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 677 30 100.0 36 .............................. GTTACGTCGTCTGCTTCAATCAGTAAAAAATAGCCT 611 30 100.0 36 .............................. TAAACCACGGGGCCGCATGATCCTAACCCAACCCCT 545 30 100.0 36 .............................. TATAGGTCTTAAGATAATCAATCCCTTGTCCAGTCG 479 30 100.0 36 .............................. ATGATGCAGGCTCTGGTCGATATATTCCAGCGTATC 413 30 100.0 35 .............................. TGAGTTTGCCCGTCAATAGCTCGACGTAGGCTTTT 348 30 100.0 33 .............................. AGACTTCTACGCAAAACCCTATCTAACGACGGG 285 30 100.0 36 .............................. GAGAATGGCAGGAGACATGGGCTTCTGCTGTTCGTA 219 30 100.0 36 .............................. AAGTGACACGACAGTTTCGAGATTGCCTTTATCTAG 153 30 100.0 38 .............................. TTGACGAACATGTATTTCAAAGAGGGCACACCCCCGAT 85 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : TACGTCTCACTGATTCTGGGCGATGGCAGTCCTTTACTGCGGAGGATGCCGAAAAAGCCCAGCCCGGAGAGTTATACCAACGTCATTCAGCCGCATTTCGATCTTCATTCGGGCAACAGTACCCTCATGATCGGCGATACCAGCATGGACCTGCAATACGCCAACAACTGTGCGATTGATTCCTGCTGGGCCACGTACGGATTTGGTGATCCTGAAGCCTGCCGGCAGCTCCATCCTACCTACGAAATCAGTAGTTTGCTGCAATTGAAGGAGGTGATTCAGTAATCTGGCTCGTCGTCGATGCCGCTACAGGCTGACGATTTCCGACGGTCCATCCTCCCCTTTTTCCAGCAAAACGGCCTTCCAGAGCCCTAAAGCGAGTCGTCGATCTCCCGGTAAAATCGTATCATTGCTGATCGACGCAGTAAGGTCTTGTTTTCTGACGAAGAAATGTCCATTTTTAAACGCCCTGCGGAGATTTGAGGGGCTCGGTAGTTGGG # Right flank : TCATGATCCTAACCCAACCCCTGTTTAAAGCCCGCAGTCTTAATCGTACCTAGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 952-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000021.1 Siphonobacter sp. BAB-5405 BAB_5405_c21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 951 30 100.0 35 .............................. CTATGAGAACGCTTTTATACCTATATGCTTCTATA 886 30 100.0 36 .............................. ATGAATCAGGATTAGATCACGATTAGGCACATTCTG 820 30 100.0 36 .............................. AATATTAGAGCGGTTACAGGAGTCTTGAGAATCAGA 754 30 100.0 36 .............................. TCTTTCTGCCTTGGGCATAAAGAGCCGTTTGTTCTT 688 30 100.0 36 .............................. ACGTTGACGGCCCGAAAAGAGGCAAAGGGCATATTT 622 30 100.0 37 .............................. AGAAGAAACGGGAAGCAGAAACGACCTTCGGCATGAA 555 30 100.0 36 .............................. AGCCAAGCCTTTTGTGATCGAGGCCAGTGTTATGGA 489 30 96.7 36 .......C...................... AAAAGCTCAAGCAGGCAGAAGAGTTGGTTGCCAAAT 423 30 100.0 36 .............................. TTTGGATACTTGTTAGCGATATAGAGTGCCTTATCA 357 30 100.0 35 .............................. AAGTAGATTCCGACATTAAGGAGTTAATTATTTCG 292 30 100.0 37 .............................. ACCCGTAACTTAATGCCCCTGCGTTTCGCCTCGTAAA 225 30 100.0 36 .............................. TCAGAAGCTCCCATTGCGAGGGACGTTCGGCGAAGA 159 30 100.0 36 .............................. ACGGGACCCTGTATGAAAAGGCCATGGCCGCGGGCG 93 30 100.0 35 .............................. TGTATTCGAGTGATGCTGGATTGCTATTGCCTATA 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.3 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : TTTTATCGTCACGAAGGGCATTTTCTATAATGAAGAAGAACTTGCCAAGTACCCACCGGCCCTGAAATCCATTTACCTGAAGCAAGGGGGCGAAATCATTTTTGATCAGGAGTATACCGTTTTCGGTGAAGTAACCAAGGGCCTGGACATTGTCGACAAGATTGCTCAAATGCCCCTCGGCGGTTTCGAACGGCCAACCGAAATTGTGAAGTTCTCCATGAAAGTGCTGGATTAGAAAAGCAATTTTTCATCCGAGCGTACCCGTTAACGGAAGCTTTCGAAAGGTGGTTTTGTCGTCGATCACCTTGGAGATTTCTCCGTACCAAGTAAAAATAGCTTAGTTCTGAACTAAGATCTTCATAAGTAACTGATTACTAACAGTCGTCGATCGCCAGGGGTTTTCCTATCATTGGCAATCGACGACTATTTTAATTTTTGGAATGAAATAAAAACTTTCACAGGAGTTTAGAAAAGGGGGTTTTAAGCTGTAATTTAAGGGG # Right flank : A # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 61-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000012.1 Siphonobacter sp. BAB-5405 BAB_5405_c12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 61 30 100.0 36 .............................. GAGCAATTCATGGTAGGTCTGGGCGGTTTCAGGCTC 127 30 100.0 36 .............................. ACATTACTACGCATACAATCGACATCAGTAAACGGT 193 30 100.0 35 .............................. AAAGTTCATCGACGTTAGAAAAAGACCCGATTCTA 258 30 100.0 35 .............................. GGCAGAACGAATGGCCGTTTCGACAAAGGGTACAG 323 29 73.3 0 ............T.A.A.CA.....-.C.C | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 94.7 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : ATCGTACCTAGTTGGAATTGAAATGTTTTATCGGTATTGAGTCCGGAGCCAGTCACCATTG # Right flank : CCCCAGTCCCATCCAAAACTATTCTTAACTAACAAGTCCAAGTGATCTAACACTTGGACTTGTCGTGAACATGCTCTTACAACCGTACGGTTTTGCGTACCATCCGGGCGATGGACTCTTCATCATTAAGCGTAGTCACGTCCGCGAGCGGTACCCAGCGAATGTCTTTCGACTCCTGATTGATGACGATCGGCTGCGTCGCGTCGGCTTCAAACAGAAAGCGGACGTCATAATGCAAATGCTCCGGTTCCTGACCCCGGGCGGGAATGGTGTGAATGTCCACATCAAAAATGGCCTCGCTTACAGGTTTTACCATAACACCCGTTTCTTCCCAGGCTTCCCGCTGAGCCACTTCCTGTACGTCTGGATTCCCATCGCAGTGGCCACCGGGCTGAAACCAGCGATCGAGTTTGCGATGGTGCATCAGTAAAACCTGCGTGCGGGTTTCATCCAAAACCCAGGCCGATCCCGTTACGTGACCCACGAGCAAGGTTCGCTCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 56-746 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJAG01000024.1 Siphonobacter sp. BAB-5405 BAB_5405_c24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 56 30 100.0 36 .............................. CGAAGAAAGATCAGGCTAAAATTATTTTCGATGAGG 122 30 100.0 37 .............................. TTCAATACTCGCTGCCAATTAGAACCGGTTTCGGTAA 189 30 100.0 36 .............................. TCCGGAAACTTTTCGGTACAGTTGATTCGGAGCAGA 255 30 96.7 38 .........T.................... TTGATAAAGTATGGAACCCGCTAAAACCCCAGAAAAGA 323 30 100.0 36 .............................. CTCCGTTCGGTCGCGGCTCTACGTTCCTTGCGGCTT 389 30 100.0 35 .............................. GTTCACGACCGGCATGGATCAGGCTACTCGGCAAC 454 30 100.0 36 .............................. GCAGGAGTCACATGCTTCCATGTCGATCTTTTGATA 520 30 100.0 35 .............................. GGCACCAGCTGCGATGTCAGCCACCGCCTGATAGC 585 30 96.7 36 ...................T.......... ATGTCCTGGCCTCTGGGAAGGTTTACATACTGCGGA 651 30 96.7 36 ................A............. CCAATATCCCGGCCACGCGGGAGGTTGATGTATTGC 717 30 86.7 0 ..T.......C....TT............. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.9 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : ACCTAGTTGGAATTGAAATCGGTGTCAATTCGGTTAAAAACTCAGTTTGAAAATTG # Right flank : TGTCCACCTTCTGACTCGCTGCTGAATCATGCAGGCATCCTAATCGTACCTCATCGGAATACACCAGACTCAACCGAACCCTACTTCCCCACCTCAAACGTCATCCGCTGACTTCCGGCGTCGCCTTGGGCAGAGAGTCCCTGAATGACTACCTGATACGTACCGGACAGATCGGACGTGTAAAAATCGAGGGCCTGGGTTGCTTTTACCTGCGGAGCCCAGTACAGAAGCGTTCGAAAATCGGCCGTACGGCTCTGGCGTTGCTGAGGCGTGTCGTAACGGGGTGAATAAAACGTTCGCTGGGCCTGTACCCCCTCATAGGAAGTAATCAGTCCCTCGGGCTGAAAGCCGGCCAGGTCACCCTTATAACTCCGGAAACTGACAATTCCCTCAAACAGTAAAGGGCCCAGAAAATACCGCCGGTTCACGACATCGAGCCGTTTGATTTTCAGCGGATCAAGGGCCAGCACTTTGTTTACATCAAAGACCGGCACGCCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //