Array 1 43279-44772 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOU01000047.1 Escherichia coli strain JML080 sequence047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43279 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 43340 29 100.0 32 ............................. GCTTCCTCCGGAGTAGTGGCAATCACATCAAA 43401 29 100.0 32 ............................. GTGGTAAGAAGTGGATCTTTAACATCATCGGT 43462 29 100.0 32 ............................. CCTGGCTACGGCAGGCGTTAATTAATAATCCG 43523 29 100.0 32 ............................. CAATTTTGGCAAGTTGCGATACCCAGGAACAA 43584 29 100.0 32 ............................. AATGCGTGTCTGCCGCTGCTGAGTTTTGCTGG 43645 29 100.0 33 ............................. CATTCATTACCGAAAATGATATAGGTCAATGAA 43707 29 100.0 32 ............................. ATCCGCAACAGTGATGTAACGCTGATTACTGA 43768 29 100.0 32 ............................. GAAATTTCGGAAATTAAATCCGCTCGCGATCG 43829 29 100.0 32 ............................. ACGGTCCACGGCTCACAGGATCCGTGTGTAAA 43890 29 100.0 32 ............................. AGCATCTTCAATAGTGATTTTGATACCCTCGG 43951 29 100.0 32 ............................. TATTAAATGTTAAATATTCCGACCCGCCTCAC 44012 29 100.0 32 ............................. CCCCCAACGACTAAACGCAGCCTCGATTGCCA 44073 29 100.0 32 ............................. CGTTCTTCAAACGCCACCTGGTCAGTGAGTGC 44134 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 44195 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 44256 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 44317 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 44378 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 44439 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 44500 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 44561 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44622 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44683 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 44744 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATATAAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97431-95449 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFOU01000023.1 Escherichia coli strain JML080 sequence023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97430 29 100.0 32 ............................. ACCAGATCGCACTGACTGATAATGGTGAACAA 97369 29 100.0 32 ............................. TTTACGCCTATTTTTGCATAAGGTGAGCCAGC 97308 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 97247 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 97186 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 97125 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 97064 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 97002 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 96941 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 96880 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 96819 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 96758 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 96697 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 96636 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 96575 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 96514 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 96453 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 96392 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 96331 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 96270 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 96209 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 96148 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 96087 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 96026 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95965 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95904 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95843 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95782 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95721 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95660 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95599 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95538 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 95477 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //