Array 1 4259888-4261687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017707.1 Chromobacterium vaccinii strain 21-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4259888 29 100.0 32 ............................. GGCGATTTGCGGGCCTTCTGGCGCGCGTTCAT 4259949 29 100.0 32 ............................. ACTAGCGCAGCAGGTATGTACCAGATCAATCT 4260010 29 100.0 32 ............................. GTGAAAGCGGACTGCACGGCGCGCGCCATGTT 4260071 29 100.0 32 ............................. ATGATGAACCGCGTGGCCGACCCCGGCGAGCG 4260132 29 100.0 32 ............................. CAGGAGGAGTTCGCGCAGTTCCTCCAGGACAA 4260193 29 100.0 32 ............................. TCCAGCTGCTCCAGCGCCAGACCCAGCGCGCC 4260254 29 100.0 32 ............................. GGATATGACGATTACGCGCGCTGCCAGTTTGC 4260315 29 100.0 32 ............................. GCAACTCAGTAATGAGCTAGTTCAGTTGAAAT 4260376 29 100.0 32 ............................. AACGGGCGCGGTGGAATGCGCAGCTTTGTATT 4260437 29 100.0 32 ............................. CGCGGCAAACATATCTGATGGAGTTGATCGCC 4260498 29 100.0 32 ............................. TGGGGGCGGGACATGGAAACCGGCGAGCTAGT 4260559 29 100.0 32 ............................. GGTATTGGGCGACATGGGCGTCAAGGGCCCGA 4260620 29 100.0 32 ............................. CCTCGATGGCGACGAAGACATTCGAGACCGTG 4260681 29 100.0 32 ............................. CGCCTGTTCCACATGCCACGTAGAGCCTTGAC 4260742 29 100.0 32 ............................. TCTCACGCGCTACGCCTGAAAGCAGCCTTGCT 4260803 29 100.0 32 ............................. CGGCGACTGCCCGATCAGAAATTCATTGTTCA 4260864 29 100.0 32 ............................. ACCCGCGCATTCCGGCCGACGCGCCGCGCGCC 4260925 29 100.0 32 ............................. GGTTTTGCCGCTGCCAGGAGTGGCGGTTAATA 4260986 29 100.0 32 ............................. GGGGTTTGCAACTAGAATCTTTTTTCGGATCA 4261047 29 100.0 32 ............................. CTGAGTGGCGATTACCTACGCGAAGCGCTGGA 4261108 29 100.0 33 ............................. CACGAAGACATGCGTCCGTATCTGGCGTCAGGA 4261170 29 100.0 32 ............................. CGTTCGCCAGCGTGACCGATGGTTCGATCAGT 4261231 29 100.0 33 ............................. CCGTGAGCCCGCCTGTGAGCGTGAGAATCTGGC 4261293 29 100.0 32 ............................. CGGCCTGGTCAGTCGATAAAACTGGACAACGC 4261354 29 100.0 32 ............................. GTCAGGCCGCTAACTGGACCACGCCGCTGTGG 4261415 29 100.0 32 ............................. TGCTACTTGGGGAAAAATTGGATTGGCTGCCC 4261476 29 100.0 32 ............................. CCCAGCCGGCTGGCAGCCTCCGCCGGCGTCAG 4261537 29 100.0 32 ............................. CTGTAATCCAGATCGGGGTTTGTCCAGACGAC 4261598 29 100.0 32 ............................. TTGTTCCGCGAGACCTACCACGAGATTCCAGA 4261659 29 75.9 0 ................C..A..C..TTTT | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.2 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTAAGCGGCTTGCCCGGACCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGACTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGACCGGCATGAAAAAAGCGCCAGCCAGGCGCTTTTTGCTTGCATGTCATTGGAATGTCGTTAGTCTATGGCGTCTGGCCGAGCCAAAGCCGGGCTGTTGAGAGGCCTTGCGCCCAGGCTCTGAGGCTAGCGCGCGGCCCGCTTGGAGAGGGACAATTTCCCAAGGCCGCGCGGTGGTTTGCAGGGGGATTTGAACGGCGTTTTATGGCCGGAAAAATCGGTAGAATTTCAGAGTGGGTTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : TTCGATTAGCAGTTGGCGCATAGGGGAGCGTGGCCCATATCCGCTTCTGTCTGCCAGCCCCAAGCCCGAAAACAAAAAAGCGCCCCGTGGGGCGCTTTTCTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAATCCTTGCGATCCAGCACCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4268994-4270918 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017707.1 Chromobacterium vaccinii strain 21-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4268994 29 96.6 32 ............................A ATTATTACTGCGCTTGGCGTTGGTGCCGTTTC 4269055 29 100.0 32 ............................. TCTCAGGCTGAGGGGCAGACGAATCAGGTTTA 4269116 29 100.0 32 ............................. CAGCATCAATCGTGCTATAAGTCACACCACCT 4269177 29 100.0 32 ............................. CAGTTCGGCCATTTCCTTACGGCTCATTTCGC 4269238 29 100.0 32 ............................. CGCCGCGAGCGCATCCAGATCATGGACTGGTG 4269299 29 96.6 32 ............................C AGTTCCTGCGGCGCTTCGTATAGCAACAGCGC 4269360 29 100.0 32 ............................. AACGGATCGCCAACCAGCGGCAGCTTGCCCAC 4269421 29 100.0 32 ............................. TTTTTACGGGAGAGGGCAGTAACCTCGCCGCA 4269482 29 100.0 32 ............................. GCAAACTGCGCGGTAGTGTTCGCCACGCAGTC 4269543 29 100.0 32 ............................. ACGGCGCCCCACATGGTTATTGTCTCCCGTCG 4269604 29 100.0 32 ............................. AATTGGTTAGAGAGTTGGCGAAGCGAGGCCAA 4269665 29 100.0 32 ............................. CTGGTCATCCCGCGCGCCAAGTCGACGACGAT 4269726 29 100.0 32 ............................. TCTTGATCGAGCGGGCCAGGAACCCCATGCCC 4269787 29 100.0 32 ............................. TTGTCTCAATATGAGACAAGAGACGGGTATTA 4269848 29 100.0 32 ............................. ACAGCAGTCCAGAATAGTCGCATGGCGGTTTG 4269909 29 100.0 32 ............................. TACATCAAGTTGAGGACCGCGCGCGCCAATCG 4269970 29 100.0 32 ............................. CGATTCACCACCGATTCGCAATACACCTACGA 4270031 29 100.0 32 ............................. CTGTATTAGATGCGGGCGGCTGCGGGTTATAC 4270092 29 100.0 32 ............................. AGAACCTGGGGGATTTTATACGCGGGTTCGTT 4270153 29 100.0 32 ............................. TCACGCCGCTGGTTGGCCGCGTGAAGACCGAT 4270214 29 100.0 32 ............................. ACGCCATCTCAGCGCTGATCGCTGGCGTGCGA 4270275 29 100.0 32 ............................. CGCGCCTCCAATGGCGCCAGTCGCGCCTCCAA 4270336 29 100.0 32 ............................. CTGCAAGCACTTCTACCTATGGCAATTACTCT 4270397 29 100.0 32 ............................. GACTCGCTGCTGTGGGCGCTGTGCAAACTGGC 4270458 29 96.6 32 ............................T CCAGATTGCGGCCGGCGATGGCCGGATCGGAA 4270519 29 100.0 33 ............................. GACACCGCCACATGCGCCCTACTTCCCTTGTTT 4270581 29 100.0 33 ............................. GAATGGATTTCCCCAAACCCGACGCGCAACGAC 4270643 29 100.0 32 ............................. TAGACGCCGTCGATTTTCAGGTGCGGCATGGG 4270704 29 100.0 32 ............................. GCCGCCCAGCAGCAAACTGGCGGCACCACTCA 4270765 29 96.6 32 ...........T................. ACGCGCTCTACGCCCAGGGCCGCACCAAGCCC 4270826 29 96.6 32 ...............A............. TGTTCCGGCAACTGTTGGGCCATCTCCAAATA 4270887 29 86.2 0 .C.........A..C........C..... | C,TT [4270910,4270913] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.0 32 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGTCTGCCGCAGCTGCAATGCGCCGACCGTGTCTTCCGTCCGCTGCACGAGCGGCTGGCCACTCAGGCGCTGACCGGTTTCGAGTGGCTCAATCCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCGGCGGAACCTGCCGTCTATGGCAAGCAAACCTTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCAGGCCAGCCGCCCAGGCTGCTGCGGGTGGCCGATTGCGCGGGCAAGTGAGTCGCTGGAATAATGCCGATGTCGTTTTGCTGGCCATGGCACGGTAGTCTTCCATGGCTGGCAGGCGGTATTGCCGGGTGATTCAGCTGATTATTTTTTGGGCGGGAAAATCGGTAGATTTTTAGAGTGAGTTTTTATCTTTAAAAATCAAAATGTTGAGATTGGT # Right flank : GCTATATCAGTCGTTCAAGAGTTCTCCATCCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGATCGGCGTGTGATTCACATCCGATCGCCGGTTTCGTTCAGGTGGAAATGATGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGTCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCTGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGGCCGATAGATGGCGAGGATGGCATTCTGATGCAGCTTCGCCGATTCATGCTGGAGCTGGAGACGGCCCATCGGGAACTGGTCATTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4281504-4282753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017707.1 Chromobacterium vaccinii strain 21-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4281504 29 100.0 32 ............................. AAGCCTTTCTAGTAAACCGCCGCCGGGCGCAG 4281565 29 100.0 32 ............................. CATGCGTGGCTGCGGCTGAAAAATCCAATAAC 4281626 29 100.0 32 ............................. TCTACCGGCAAATGCATATAAATCAGTAATAT 4281687 29 100.0 32 ............................. TCGGCACCTACGTAGCAGGTTTGGGAGCCGGC 4281748 29 100.0 32 ............................. TCCGTGGCGGGGAAATGGGCCTGCAGATTGGC 4281809 29 100.0 32 ............................. CAGGTTTGGGAGGATTTCAGGAAAAAGCTCGG 4281870 29 100.0 32 ............................. TGCTTCCCTGTCTTCTGGGATTGCTGAGGCTA 4281931 29 100.0 32 ............................. GCAGGCGATTGAGGCCGCCCCGGATGCCGCAT 4281992 29 100.0 32 ............................. TGCATTTGGTAGCCGAGGCCATGCAGCCGGCC 4282053 29 100.0 33 ............................. CGCGGCGTCTCGATGACCTGGCCATCGTCCGGC 4282115 29 100.0 32 ............................. CTGCTTCATATATTCGGTTTTGGCGTGGCCTC 4282176 29 100.0 32 ............................. AATCTCGGCACCCAACTGACCGACCTGAAAGC 4282237 29 100.0 32 ............................. CGAAGACCGACACTCCAGCAACTGGAGGCCAG 4282298 29 100.0 32 ............................. GCGGCGCGGATGGAGGAATCGACCTGCTACTG 4282359 29 100.0 32 ............................. CGCGTGGTCAGGCTCTTGGATGGCCGGGGTAG 4282420 29 96.6 32 ....................A........ GTGGCGAACCGCAACGCGGCGCCGAAGCGCCA 4282481 29 100.0 32 ............................. TCGAGTTTATTCACGCCGCCACCTCGCGCGCC 4282542 29 100.0 32 ............................. CAGGCCCTGGCCGGCGCAACGCCGGAGCAGAT 4282603 29 100.0 32 ............................. ACCAAAACGCCATGGCGCAGGAGATAGCCAAT 4282664 29 100.0 32 ............................. CCCCAGCCGTTGCCGACACCGGCGGCGTCCAG 4282725 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACGATGCTGAACGCCGGCGGTTTGGACAAACCGGAGGAGCAGGGCGTGGTGGGCGCGGCGTTTCCGGAAGACGAGGGACTGGGCGATGCTGGTCATCGTGCTTGAGAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTTGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATCCGCGACTACCTGTGGCAGCAGGTGGAGGAGGGGTTGGAAGACGGCAACGCGGTGATGGCTTGGCAAGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAGTTGGTGTCTTTTCTGCCGCCTCCGGTACCGGAAGAGACCCGTGAATAGCATGTGGATCGCTTTGCTTCAGGGGGCGATTTGGCTCTTCGAAAATCGGTAGATTTTTAGGTGGTGTTTTTATTTTGCAAAATCAATTGCTTGCGATTGGT # Right flank : GTGATGGGATGGGGTTGGGATTGCTTGAAAGAGCTATTTCCACTCCCGCAGGGATGCGCTGTTATCTTGCAATCCGTCTATGTCTTTCACGCGGGAAGCCGTTTGCCATGCAATTCCGTTCCCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTAGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTTTGGCTGGGCAGCGGGGTGACTTTTTCCGCGCTGCTGATCTCTCCCCGTTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGATGATCTGGGGCATGGCGGCGCATGGCCTGAATCCGGTGGGCGCGGCGGCTTTCGCCAGCATCGAGGCGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGACAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //