Array 1 262620-262365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXBG010000011.1 Cystobacter gracilis strain DSM 14753 NODE_11_length_346685_cov_42.482560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 262619 24 100.0 30 ........................ TCGGAGGCCTTCTTCGCCTCGGGGGCCTTC 262559 24 100.0 38 ........................ GGGCCTTCTTCGGCTCGGGGGCCTTCTTCGCCTCGGGG 262529 24 95.8 30 .................A...... TTCGCCTCGACGGCCTTCCGAGGCTCGGGA 262475 24 83.3 12 ..........C...C.CC...... GCCGTTTCCGGA Deletion [262440] 262439 24 100.0 27 ........................ TTCAGCTCCGCCGCCTTCTTCTCGGGC 262388 24 95.8 0 .................A...... | ========== ====== ====== ====== ======================== ====================================== ================== 6 24 95.8 28 GCCTTCTTCGGCTCGGGGGCCTTC # Left flank : CATCGAACACGCGCAGCATGGCGCGAGGCGACTCGAGCCCCTCCCGAGTACGAGCCAGGGTGTCGAGCCTGAAGTCCCAGCTGATGAAGAGCGTGTGGGGATCCCGGGCCAGGGCCAGGGCCAGATCGTTCCCGTAGTCCAGCGGCAGCTCGCCGAGCTCCTCCTCGAAGCCCGAGGTGTTCGGGATCGCCACGGAGCGAGGGGCCTGGTCCTCGGTGAGGTGATGGCGCCGCAGCTCGCGCTCGCCCATGAGGCGCGCCACGAAGAAGCCCTCCATGAGGGGCTCGGCGGCGTGCTGGAACACGGACTCCAGCTCGGGCGAGTCCACCACCTCCGCCTCGGCCCACTCCTCCTCGGCGGAGCGCGCCTGGCGGGGACGCGGCGGGAAGTTCACCACCTGTGCGTGTCGGCTTGACTGAGCGCCCTCATCGACCGTGAGGGTCGACGAGCGAGTCGCCGCGGGCTTGCGGCCCTGGGGCGTGGAGGCCTTCTTCTCGGGA # Right flank : CTCTCCGGCACCTTCTTCTCTCCCGCACGGGCCTCCTTGCCCCGGCCCTCCCGGGCGGGCTTCGTGGCGGAGGGGGTGGCCTTGGTCGCCGCCTTGGTGCGGGTGGGCAGCTCGATGCCGGCAACCCTGGCCAGCTTCTTCAGGGCAGGGACGAAGTCGGCGAGCGCCGCGATGAGCTCTGTCTTGTTGAGCTTGCTATGTCCAGGGCCCAGGTGCTTGCGCGCCAGATCCCGCAGGTAGCTCAGGGTGACGCTCTTGAGATCTTCCATAGACAGGTCGCCTTTAGGTCGCCGCGCCCTAGGGGTCAACGAGGCTGTGGTTTTTTCTGTTCGTCGCAAGACCGGCTTCCGGCGTCACGGCCGATGACACCTTGGAAAAGGACCGAGTATCCTGCGCCGGCTTGAGCGACCTGCCCAGACTCCTGCTGTGCAGCTTCGACGTCATCCCCGGCCCGTCGGGCTCGTCGCGCCGACTGACCGAGTATCTCAAGGCATTGCCTG # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCTTCGGCTCGGGGGCCTTC # Alternate repeat : GCCTTCTTCGGCTCGGGAGCCTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 16820-16614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXBG010000002.1 Cystobacter gracilis strain DSM 14753 NODE_2_length_764895_cov_41.886016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 16819 26 88.5 34 .........AC...T........... AGGTGCCACGGTCAAAGCCGAGCGGGGCCGCTCC 16759 26 100.0 34 .......................... CGGCGAGACGGTGAAGGCCGAGCGCGGCGCGAAG 16699 26 88.5 34 ..................AAG..... TGGCGACCGCGTCAAGGCCACCCGCGGGCCGAAC 16639 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================== ================== 4 26 94.2 34 TTCTACGAGGAGATCGGCCGCAAGGG # Left flank : GGTCGATCACGTCCGGCCCCAGCAGCCGCAGCAGCGCCAGTCCACCAATGGACGAACACACGGGTGCCAGCACGCGCAGCCACTTCTTCAGCCCCGGAGACATCGCCACCCATCACCTCCCCGACATTGCCTGACACGGTTCCGCGAGAAGGTGGGCGGGCGACGGGGAATCGGCAACGTGGGGCGGCGTGTTCTCAACACAGAAGCGTCCTGCCGGACAGGCATCAGCTCGGCTAGGACGCTGAGCAGGCCTGACAACCCTTCGTAATCATTGGGGTTCTGATGTGGTTTGTCGGGTGGGAACGGCTGGCGGTGTACGGAGCTTGCTTGCATCGGGGCGCTTCCGTCCCAAGGTTTCAGGCAAGGGGCACCGTGCGAGGCGTCGGGACGTAACGAGAGGAGATGGCGACATGTCGGACAAGGACAACAAGGGCAGCATGACGGTGGCTGAGGCGGGGCGGAAGGGCGGAGAGACCGTCCGCAACGAGCGAGGCCGTGAG # Right flank : TGGGCAGAAGGTGAAGAAGCTCATCGAGGAGGGCAAGCGCGCGGCTCGCGCGGCCATGGCGCCGCAGGAGCCGACGACGCAGGAGGAGCAGAGCGCGACGCCTCCGGCGACCCCTGAGGGCCAGGAGCCCCAGCGGGAGTAAGTGACGAGGGGACACGGACCCGGTAAGAGGGGGCCGTGTTCCTCCTCATCACACTGCTGGACCAGGTGGAGCAGCTCGAGCGGGCCATCCGCAGGCTCCGGGACTTTGGAATCCCGGAGCCGCTGGTGCTGCGCGCAAGGAGCGCGGCGGCCGCGCTGTCGGCCGAGGTGCCTGTCTTCGCGGGCCTGCGCAGTCTGGCGCTGGGCGCGGACGAGGATCGGCTCCTGCTGGTGAGCCTGCTGCCACAGCCCAGCAGTGAGGAAGTCGAGCGCCTGGTGCAGCGCGTCCAGCTGGAGATGGACGCGGATGAGCCGCCCATGGGCAGGCTGATCGCCCTGCCGGTGATCGCGGCGCCGAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTACGAGGAGATCGGCCGCAAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.00,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //