Array 1 99403-98764 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOEY01000003.1 Escherichia coli strain AVC226 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99402 29 100.0 32 ............................. GACTAACTATGGCCCTATCCATCTCTGATAAG 99341 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 99280 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 99219 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 99158 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 99097 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 99036 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 98975 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 98914 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 98853 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 98792 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126446-124952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOEY01000003.1 Escherichia coli strain AVC226 scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126445 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 126384 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 126323 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 126262 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 126201 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 126140 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 126079 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 126018 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 125957 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 125896 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 125835 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 125774 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 125713 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 125652 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 125591 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 125530 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 125469 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 125408 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 125346 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 125285 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 125224 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 125163 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 125102 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 125041 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 124980 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAACTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //