Array 1 163745-162081 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOB01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51292 N51292_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163744 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 163683 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163622 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163561 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163494 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163433 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163372 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163311 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163250 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163189 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163128 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163067 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163006 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162945 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162884 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 162823 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162762 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162701 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162640 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162537 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162476 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162415 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162354 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162293 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162232 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162171 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162110 29 96.6 0 A............................ | A [162083] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181128-180002 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHOB01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51292 N51292_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181127 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181066 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181005 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 180944 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180883 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180822 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180761 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180700 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180639 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180578 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180517 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180456 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180395 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180334 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180273 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180212 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180151 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180090 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180029 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //