Array 1 31372-30711 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAS01000018.1 Micromonospora sp. AMSO12t AMSO12000018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 31371 28 100.0 33 ............................ GAGCGAGCGGACCCTGCCGATCCCGGCGCCGCT 31310 28 100.0 33 ............................ CGTCAGCACCCACAGGCCGCCGTAGGACACCGC 31249 28 100.0 33 ............................ CAAGTCTCAGCCCCGCGTCGTGGGCCTCGACCT 31188 28 100.0 33 ............................ GTATCAGCGCATCTATGCCGCGATCCGCGCGCC 31127 28 96.4 33 .......................A.... CCGTAGAGGATGGAACGCGAGGTGTGCTGTCAC 31066 28 100.0 33 ............................ GGAGGACCTGGTGCGCGAGGGAATCTGCGTCGG 31005 28 100.0 33 ............................ CGGGACCTGGACCACGAACCCCGCCTTCTTCCC 30944 26 92.9 33 ................--.......... GGGACTACCTCCGTTGGGTCTTCTTGGCGAGGT 30885 28 92.9 33 T.............T............. GCGGTACCGGTCGCCCTCGGCGACGACCGCCCG C [30867] 30823 28 100.0 57 ............................ CGCATCCGCCCGGCCCTTGGCGTCCCGCAGCTTCTGCTCCGCGTACGCGTCGACCTC 30738 28 71.4 0 .....T.......C.TT....A..G.TG | ========== ====== ====== ====== ============================ ========================================================= ================== 11 28 95.8 36 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AACCGCACCCGACCCATACCTGCGACCGCAGTCCGGGTGCCGTCGGCCCGGCGGATCACCGCCTGGATCATGCGACCCGGCCACAAACTCACCGACGACGACCACACCGACCTCGCCGACGCCCGCAGCCGCTGCCCAGACCTCGACACCGTTGCCGATCTCGCCCGAGGGTTCGCCGCACTGGTCCGCCACCAGGGCACCGGCCAGCACCTCGACGCCTGGATCGACCGCGCCCGCAACGCCGGATACTCCGAAATTCGCGGCTTCGCCGCCGGCCTGGCCAGCGACCGCGACGCCGTCGTCACCGGCCTCGCCCAGCCCTGGAGCTCAGGCCCCGTCGAGGGCCACGTCAACCGCATCAAGACGATCAAGCGACAGATGTATGGCCGCGCGAACCTCGACCTCCTACGCAAACGCGTCCTGACCAACCCGTGAGCCGCCACCAAGATCAATCACAGGAAGTGTGCCAGAGCCAGTTTTCAGGCGGAGCCGACAGAGTT # Right flank : CCGCTTCGCCCTACGTCTAGCCGGGCGGAAGTCTGGCCCACGTTGCCGTATCACCCCGCCCGGGCTCGCATCGATGTATCCGACGGAGCCCATGTCAGTCTCGGCGGCGCCACTGCCTCCTTGCTCTCGACATCAAGATCGAGAACATCAAGTTCCACAGCATCGCTGACCTGCAGGATCGCCATGATTCGACTTATCAGCGAGCGCCGTACCGCGCGTCGCCGAGGAGCGTCCTCCTGCCGACGGAAGTGATCGGCCATCTGCCGCCATGCGTCCCGCTGGTCATTGCCGGACGTGACGACGGTGGTCGTTGATGAGGGTCGCCAGCGACGTCGTCGGGGCTGGGTTTCAGCAGCAGCGATGGTGGTGACGATCTGTTGCAGTAGCTGCATCTGTTGCTCTACCTCGGCTCGTTGTCCTGCAAGGTCGTTCACCTCTTGCCGAGCCGTTTCGATGATTATTCTGACGTCGGCGCGTGCCTGCCGGAGAAGGGCGTCAGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 1582-6308 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAS01000200.1 Micromonospora sp. AMSO12t AMSO12000200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================== ================== 1582 30 100.0 31 .............................. AGCCGCCGTACTTGTAGATCAGGTACAGGTC 1643 30 96.7 31 .............................C GTGTCTACGTCGCGGAGGGCTGACCAGTGGC 1704 30 93.3 31 ............................CC GGGCGACGTCGCCCGTCATCAACGCACCGAC 1765 30 93.3 31 ............................CG TGCCGCACCACCGAATTGATGATCGGCGAGT 1826 30 96.7 31 .............................A AGACGACCGGTGCGCGTACCCGGGCGACCAC 1887 30 93.3 31 ............................CG GGGACCGGTTGCGGCCGTTGCTACGCGGCAT 1948 30 93.3 31 ............................TC TCATTTCCGGCGTCTCTCTCACCGACGCTAC 2009 30 96.7 31 ............................T. GCAGCGGCCCGTGGGTGGACTCCCACCACAG 2070 30 96.7 31 ............................C. TTGCCCCCACCGCAGGTCACGAAGCCGGAGA 2131 30 96.7 31 .............................C TGAACCGGTCGTCGGTCACCGTGGATTCCCA 2192 30 96.7 31 .............................C CGGTCGCGTCGCCACCGTTCGCGGTGGACGA 2253 30 93.3 31 ............................CA CGGTGCCGTTCGTAGCCGCCCGGGGTGCCGC 2314 30 93.3 31 ............................CC ACACGCCACGCAGGAAGCCGTACGCGGGGAT 2375 30 96.7 31 .............................A AGGTAAAGAGTGTCGCCGGTAGGAAGGCGTC 2436 30 93.3 31 ............................TG GTCTACCCCATTTATTCTGGACCTGAAAGAA 2497 30 100.0 31 .............................. GGCTTGACCGTCGGATGCGCCACCCCGTCCA 2558 30 100.0 31 .............................. CGACGGCCGCCGGAGCGGAGTCGACCGTGGA 2619 30 96.7 31 .............................A AGCTGCGGGAGCGGCTGGAGGCTGTGCAGCA 2680 30 93.3 31 ............................TG TGCTAGAGAATGACATCCTGGGTCGGGTCAC 2741 30 93.3 32 ............................CG CCTGGTTGACGAGAGCATGCACAGCCCTCGCC 2803 30 93.3 31 ............................CC ACCTTGATCCCGTCGACCCGGACCACCCGGC 2864 30 93.3 31 ............................CA CCACTCTGACCGCCCGCGACATCCACACCGC 2925 30 93.3 31 ............................TG CGCGACCCGACCACCCCGGAGGCCAGGGTGA 2986 30 93.3 31 ............................CC TTGGAGGACCAGAGATGAGCACCACGACTGT 3047 30 96.7 31 ............................T. CCTCCGACTCGGCGGCCCGCTTCTCGACGTA 3108 30 100.0 31 .............................. GCCCGTCGACACGCAGCCCGGCGCCCGTCAT 3169 30 93.3 31 ............................CA TGGGCGCTCGACTGTTCTTTGACGTAGAGGG 3230 30 96.7 31 ............................C. CACCATGCCGGCCGACGAGGTGTAGACCAGC 3291 30 93.3 31 ................T...........C. GGCCGGTCAGGACCGGGCTGTTGCCGTCCTC 3352 30 96.7 31 ............................C. CCGTCATCGGGTCATCGGCGTCCGGCACCGC 3413 30 100.0 31 .............................. CGACCGCCCGGTCGGAGCCCTCGTGGCCGGC 3474 30 96.7 31 .............................C CGCGCTGGTATGCCGGTCGCAGCCTGGACGG 3535 30 100.0 31 .............................. CGCTCCGTCACCACCCGGGCAAAATTGCTGA 3596 30 93.3 31 ............................CG ACAAGTTCGTGCTCGGCATGGTCACGATCAG 3657 30 93.3 31 ............................CA AGGTCGGCCTGCTCAGCGTGTCGGGCACCAA 3718 30 90.0 31 .......................A....TG AGCCGGTGGAGTTCTCTCGCCCGGTGGGTCG 3779 30 96.7 31 ............................C. GCGCCGCGGAGTACGCCACCGGCGCGGTGAC 3840 30 90.0 31 ................T...........TG CCCTGGGTCGGCCGTGGAAACTGGCGACGCC 3901 30 96.7 32 ............................C. GGAAGTGGTTTCTCATCGGGGCGGCGGCCGGC 3963 30 96.7 31 .............................G GAGCCCTGCCGTCGGGTAGCCGACTGGCAGG 4024 30 93.3 31 ...........C.................G AGAACTGGCACCTGCGGCAGGAAGCGGCCAA 4085 30 86.7 31 ..A.C.......................CC GTCACATACCCGCCGGGAACTGGGCAGTCGG 4146 30 93.3 31 ............................CG GCTCCGCAGTCGCGGTAGCAAGCGCCCACGT 4207 30 96.7 31 .............................C AGCCACGATCAACGCCCTCGCGGACGCCCTC 4268 30 93.3 31 ............................CG ATCCGGCAACGCACGTGGGGCTCTATCTTGG 4329 30 90.0 31 ...............T............CA TCAGCGCGCAGATCGGCGAATGCTGGATCGC 4390 30 93.3 31 ............................TC TGGCGGCGTTCCGCCGGCCGGGCGGTGACTT 4451 30 93.3 31 ............................CA CGAGGTCGTCGATCTGGTCGGTGATGTGGAT 4512 30 96.7 31 ............................C. CCGCCTCAGACTCCGACTCGATGCCGAACGT 4573 30 93.3 31 ............................CG AGCCGGCGACGTTGAGGCCGAGGGGCCCGTG 4634 30 100.0 31 .............................. TCGCGCTGGGGACCGTGGCCGTGGTCTGGAT 4695 30 100.0 31 .............................. TGTTCGGCTTCCACGCCGTCGAGTGCGCGTC 4756 30 96.7 31 ............................C. GGCCTGACAGTCCGGCGTGGACAGATGCGAA 4817 30 90.0 31 ....................A.......CC GCTTCGGCATCCGCTGATTCCTTCCGTTGCG 4878 30 93.3 31 ............................CG ACACCAACAACAAGCCCATGCTCGGCCCGAT 4939 30 96.7 31 ............................C. CGGTCAGGTCCGTGGTGTCGCGCTGGTCGAC 5000 30 100.0 31 .............................. CCACGGGGTATCCGTCCTTGCATGACGGGCT 5061 30 93.3 31 ............................CG CCCGCTGGCGGGCCGGGTCGAAGATGGCGCC 5122 30 90.0 32 .........A..................CC AAGGTGGCGCGAGACAGCGAGCGGAAGCTGTG 5184 30 93.3 32 ............................TC TCGGCGGCCACATCCCGAGTCAGCCCGGACAC 5246 30 93.3 31 ............................TC CGGCGGGGTTACGGACAAGGTCGGAGACGGG 5307 30 96.7 31 ............................T. CATCCACGCCCGCCGGGCCGGCGACGTCGTC 5368 30 93.3 31 ......................C.....C. CGAAGCGCAGGCTCGGGGTCCCGGACTGGTA 5429 30 96.7 31 ............................C. CCAGCGCCCGCCGCCACGCCGCCTCGCTCGG 5490 30 100.0 31 .............................. TGGCCGGCGCCCAACCGCTCTGGCGGTGGGA 5551 30 90.0 31 .....................A......CG CGTCGGCGTCGTCGACCCACCACCACGGGAT 5612 30 100.0 31 .............................. TGGCCGCCGACGGGTCGACGATCGTGTACTC 5673 30 90.0 31 .........A..................CG CCAAGCGGCAGGAGCGCGCGGGCCTCGCGAA 5734 30 93.3 31 ............................CG TGGTCTTGCGGGCCGCCGGGTCGACGGCCCC 5795 30 90.0 31 .....................A......CG CGAAGTTCTACGCCGAGGAGGGCCAGTGGTC 5856 30 100.0 31 .............................. CCGAGCAGCGCGACCACGCCCGGCAGGTGTG 5917 30 96.7 88 ............................C. GTGGCTGTGGCTCATCGTGTCGGTGCTTTCCTGCTCCCCGCACGCGGGGTGGTCCTCGGCCGGCAGACCTGTAGCAGGTCGTCCCACC 6035 30 96.7 31 .............................G GCTAACCGCAGTCGCGCGCGGAAACTGCGAC 6096 30 96.7 31 ............................A. GCCACGGGCCTGGCGGAATGCAGGGCATCTG 6157 30 86.7 31 ............A........A......TC CCAAGGAGTGGCCCCGTGCCACGCGAGAGGA 6218 30 90.0 31 ............A...............TG CACGCACGCGCCATCGGCGCCATGTCGGCGC 6279 30 86.7 0 ..............G.....A....C..C. | ========== ====== ====== ====== ============================== ======================================================================================== ================== 77 30 94.8 32 CTGCTCCCCGCGCACGCGGGGGTGGTCCGT # Left flank : CCGCAAACGGCATCCGACACCTACTCAAAGCCGAACGCATCAACCCCAAAGCCTCGACACTCCGTGGCCTCGCAGAGTTCTTCAACGTGCCAGTCGGCTACCTCCTAGGCGACAGCAGACAACCCGAAGACCCCAACCCCCAGATCCGCCTAATGACACGATCAATCACGAAGCTCTCACCCGCCGCACAAGACGGCCTTCAAATGATCATTGACAACCTTCTTCGAGTCGAAGAGGGCGCACGGCGCACTGACAGCAAGAGGCACCCACAGCGATCCGATTGAGCCCCCGCAAGCACCACCTATAGCGCCACTGTTCGCCCTCCTGTCGTGGGCCTCGCAAGCCGCCGACCGAACGATCGCCGCTCACCCGGCAGCGCTCGCCACACACCAGCGCTACGATGAAGCAGCACCTCGTCCACTCTTTTTCGGATGAGGATCTTGCAGAACCTAGTGATGCAAAATCGACTTGTTGATCTTTAGCGCCGCAGGTCAGCAAGT # Right flank : TCCACCCGGACATTCTTCGGCCCTGGTCCCGCGCACCGGTGGGGGTACATCGCAGACGTCGGCGCCGGTATCATGCTGCGCCCTGAGCGCGGGTGGCTCAGCGGCTGATAGGCCCCGTAGGTGAGGTTCTGCTCCTGCGGACGCAGGTCTGATCGCGGATCGCGCCGTACCCGCGTTCGCGTGACGGTCCCGCTCCCCCCCGCACACGTGACGTCGAAGGTTCTCGATTTGTCGCACCTATCGCTGCACGCCAGGCACACAGGGGTCTCCCCAAACCGAACTCGCCCAATCGACTACGTGTCGCATTCTTACCGTCGAATGGGCATCGATCGCCTTGCCTGTTGGCGTCCCTCTACGCTGGTCGCCCACGGCGCCCGAACCGGCGGCGCTTGGCCGCCTTGCTCCAGCCTCCAGCGACCGCAGGGTTGACCATCGGGTCAGCGGGACGCCGCATCAGGGTCACTCCATCCGCATCTACCGGAATCCAGTGATGGTCGTGG # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32576-33023 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAAS01000036.1 Micromonospora sp. AMSO12t AMSO12000036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32576 28 96.4 33 ..............T............. GAACCGGGGGAAGACGTAGACGCCGGTGGGGCG 32637 27 96.4 33 .....................-...... CTCAAGGACGCGAAGGCCAAGGCGGACGCGCTC 32697 28 100.0 33 ............................ CGCTGCCCCGTGGCGTGTCCCCTCCGTTGGCAG 32758 27 96.4 33 .....................-...... CTGCCGGCCGACGTCATCGACCCGCGCGTCGCT 32818 27 96.4 32 ........-................... TCGGCGCGGCACCTCTGACCAGGTGCCGCGCC 32877 26 92.9 34 ...........--............... GCCGTTCGCGTCCACGGCGACGTCACCGTTGATT 32937 26 89.3 33 ........-............-....T. GCGGGGCAGCGGAAAGAACTCGTCCTGCTCGGC 32996 28 89.3 0 ........G...T.T............. | ========== ====== ====== ====== ============================ ================================== ================== 8 28 94.6 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACCGCCAACCGCTGCGCCAACCAGATGCCCGGTCGACCGCCCAACGCCACCGCGACGGCTTGCAGGTCACCTGCCGCGAGGACCGTGTGGCGGGCATGCCTGCGGGTCAACCCTGGCACCTGCTCGACGAACGTCCGCCGCCCGCATTCGGCGTTCACGCAGGTGAATCGGCGGACCGTCAACGCGATGAGCACCTCATGGCCACCCAACCTGACATCGGCCAGCCGCCGCACATAGCGACCATGCACAGTGGTCGACCATGTCCCGCAGGCGCTACAGCGTGCTCGCACCGTCTGTGTCGCCGCGTTGATCCTGACCCCGACGGCCCGGATCACCACCGCTTCCAGCCGCAGGCCCATCAGGTGCGGCAGCAACGCCGGGATGATCTCCATCCCGGCACCCAACCCGAACTACCGACGAGCGCGACTCACAAAATGTGCGCCAGAGCCCGATTTTTCACGCGGCGGCGACACAGCCGGGGGCTATGCCGGCTCGGACCA # Right flank : CCTCAAACGCCGGCCCGCTTTACGCCAGCGGGTGCGGTTCACCCGGCAAGTGCCGCGACGGCAGCGACGGCTTCCTGGACTGTCGCTCTAATTTAGGCGAGGGCCCGACAGCAGGGCGCGCTCCATGAGTTCGGCTGCTCTTCGTTCGGCGTCCGGTAGGACGTGAGTGTAGACCATTCTGGTCGTACGCCCTTCGGCGTGGCCGAGCCGGTGTTGCATCACGTGTTCGGGCACGCCCCCGTCCGCACCGGCAGTAGCCGACGTATGACGCGCATCGTGCAGAGCAATCACAGGCAGGCCCGCCGCACGGCACGCGAGTTCCCACTTGTCGGTGAAGTACTTCGGGTAGTACGGCTTGCCGTCCTCCCGGCAGAAGACGTAGCCCAGGTCCTGATAGGCGATGCCCGCGGCGGCCTTCTCAGCCGCCTGTGCTTCGTGATGGGCTTCGAGGACCGCGACAACGAGTCCTCCGATCGCGATGGGGCGCGTACTCCTGCCCT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //