Array 1 393590-391701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWF01000001.1 Vibrio cholerae strain VcCHNf6 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 393589 28 100.0 32 ............................ TGTGAGTGTTTCTGCTCTCGATAGCACCCCTT 393529 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 393469 28 100.0 32 ............................ TACCCCGAATGGGTTCTTGAAGTAGAGTCGCG 393409 28 100.0 32 ............................ AGTCTCCTGTAATTTGCGTGAAACTTCCGCTT 393349 28 100.0 32 ............................ TTTTCTCTACATTCTGCCTATTTTCGATGGTA 393289 28 100.0 32 ............................ ATAAGGGAACAATTTACGTACTCATCCCCCCA 393229 28 100.0 32 ............................ TAGCAGAATTGCGCCAGAACCCCCGAACACGT 393169 28 100.0 32 ............................ TGTATCTTACATCACTCGTGGTGAGCAAGAAG 393109 28 100.0 32 ............................ TATTGACTATTGCATATACCGAAGATTTAGGC 393049 28 100.0 32 ............................ TCATTGCCGCGCTGGCGTTGTATCTTTCCATT 392989 28 100.0 32 ............................ TTTAATGTGATTGCTCATCACTCTTCCTCATC 392929 28 100.0 32 ............................ AGTACGGATACTCAGGGACGTTTGAAGAGTTT 392869 28 100.0 32 ............................ TCGAAGTAGATTTTCCGCGCCGCCTTTTCTAT 392809 28 100.0 32 ............................ CACAACAATCATTTCTGCTGCTTCAAGATCAT 392749 28 100.0 32 ............................ GTCTTTACGCAGCTTTCGCATAAAACGGTTTA 392689 28 100.0 32 ............................ TTGAACGTTTTTGGGGTAGCCACGTTTCAGAT 392629 28 100.0 32 ............................ TTAGTCCATCAACCGCATTCTTAACTTTGGCC 392569 28 100.0 32 ............................ ATAAAAGCTGAGCAAGCAGGCAGTGCGCGCAC 392509 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 392448 28 100.0 32 ............................ TTTATCAAGCGCATTCTGTAAATACGCTTTAC 392388 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 392328 28 100.0 32 ............................ TTCAAACCTCAGCTGTCGACATATTGCGCTGC 392268 28 100.0 32 ............................ TTCATGATCATCAAAAAACGCTTTAATGGCTT 392208 28 100.0 32 ............................ ATTTGGCCGATACAAGAAACTCGCCACGCCAC 392148 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 392088 28 100.0 32 ............................ TTCAAACCTCAGCTGTCGACATATTGCGCTGC 392028 28 100.0 32 ............................ TTCATGATCATCAAAAAACGCTTTAATGGCTT 391968 28 100.0 32 ............................ ATTTGGCCGATACAAGAAACTCGCCACGCCAC 391908 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 391848 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 391788 28 100.0 32 ............................ TTCACGGGCTTGTTTATCGACCATCGAAATAT 391728 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGGCCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4503-3635 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWF01000026.1 Vibrio cholerae strain VcCHNf6 Scaffold26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4502 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 4442 28 100.0 32 ............................ AACTGGCCGTAGCTGGATCACCTTTGAAGGCT 4382 28 100.0 32 ............................ ATCTTCTTCGGCCTCATCAATGCTGATTGAAG 4322 28 100.0 32 ............................ TCTAAAGAAGTGAGATCGGCAGCATTAAACCT 4262 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 4202 28 100.0 32 ............................ TCTTCGGTGTTGTCTTCAATTGCAGCGATCAG 4142 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTATCTGT 4082 28 100.0 32 ............................ GCTATACAGTGACATTGAGGTGTGGTCGCCAG 4022 28 100.0 32 ............................ TAACGTTATGTTACCTAGGAAAATCTCGTTTC 3962 28 100.0 32 ............................ GAACCGGAAGACTCGACGGAGAAGGCGACAAG 3902 28 100.0 32 ............................ ATTGTCAAACTCAAGAAAGACTTCTTGAGGCT 3842 28 100.0 32 ............................ TTGAATGCGTCTTGAATCCCTTGTGGGTTCAG 3782 28 100.0 32 ............................ TTTTCCCGCATAGTTCTGCTGAGACGAGCAAC 3722 28 100.0 32 ............................ TAAAATCTTATCTGTGATTTCTTCTGCTGTTT 3662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCTTTTCGAGAACACGTTATAGATCCAATAGAACAAGAAAAACAAGGAATAGCATACATTCCTGATGCTGACATTGAGCGTAAGCTAACTCCATTAGCACAACTTTCCCCATTATATAATCCGATCATACATCACTTGCAGGAAAAATACGGCCCTAGCTTTCTTATTCCAGTGGACTTCGACTCACCTGAATTATCAATTCGAACCGAGTGTGACGAAGATGAATAAGCCTAACAAACGCTTCAAGAGGGACAGCCAACGCATGGCATTTTTACTATGCATTGGTTTTTGTGGTTACGGTGTTATGCAGTAAGTTTGTAGTGGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTAAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTTAATTGGAGTATGTAATGAAACCGACATTTTGGAAATTGTCACAAGGGACTGAATTTTTCACTTATGAAGATATGCTTCAGTCAATTGAAGATCGCTTAGTATATGTTCACAAGGATACAGCAGCTCAAGGACAGTCATCTGTAACTCAAGGGCAGACATTTGTTGAAGCTAAAATTGGTGATTACTTCTATTTAACACATGGTAATAACGGAGTGTATGTATTAGGACAATTTACAGGTCCGATAAATTACTTCTCGAATTGGGGAGATGGATGGTCCGATCGACCATTTCGCGTAATTGCTCGCTCAAAAACGCAGGAATGTTACACAGGAATTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16417-14467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWF01000018.1 Vibrio cholerae strain VcCHNf6 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16416 28 100.0 32 ............................ TCAAGCACTTCAAAGCCGTGAACTTGGTGAAT 16356 28 100.0 32 ............................ GCATTAAGCGAACGGATAGATGTTGCTTTTAG 16296 28 100.0 32 ............................ TTGATGCAGCATAGTTTGCAGCCGCTTGAAAT 16236 28 100.0 32 ............................ CTCCAAAGAGAGCGTTCTACTCCTTGATGCAG 16176 28 100.0 32 ............................ TGCCATTGTGTCTATATGGCTCAGCATGTTGC 16116 28 100.0 32 ............................ ACGTGCATATTGCCTAAACTGCCCAGCTCTAT 16056 28 100.0 32 ............................ TCCTTTGCCTTTAACACCGGATGCCAGCGCTA 15996 28 100.0 32 ............................ TTTCATGATTTGGCTTAGCGTGGCAGGAGATA 15936 28 100.0 32 ............................ TCACCATCTGCAGGTTTTGCTAACTTACTTTC 15876 28 100.0 32 ............................ TGCGATTGATTTGTTGAAGGTTACACGTTCAA 15816 28 100.0 32 ............................ GATACAGGTCTGTAAATCGTCTTCTACATGAC 15756 28 100.0 32 ............................ ATTTCAGGCATTTCGCGACGAGCATTAGACGT 15696 28 100.0 32 ............................ AGTATTAGACTGCCATCAGGAAAGTGAAACTT 15636 28 100.0 32 ............................ TTCAATTTTCGCCTTCAGCTCTTTGCGCTGCT 15576 28 100.0 32 ............................ ACAAGCAGAACGGTTTCTTTGGTGCGCAAAAA 15516 28 100.0 32 ............................ CGGTTTTCAGTTCGCAGCAACATTCAGCATTC 15456 28 100.0 32 ............................ ACCACACGTCGGCGCGTTCAAATGATTTAATC 15396 28 100.0 32 ............................ AGTACGCGCCGCTTTACCTGTGACACGCAAAA 15336 28 100.0 32 ............................ ATGTAAAGCTGGTTGATTGATTCACATCGAGA 15276 28 100.0 32 ............................ TGAACGCCTAGGCCGCGCTCATTAATTCCCGA 15216 28 100.0 32 ............................ TAGCTCTGATAGCAGTTTGTCGGCTCGAATTA 15156 28 100.0 32 ............................ TATCACAAGAAAATTCAAGCCCACAAACAAAA 15096 28 100.0 33 ............................ TTTGAAGAGGCGACAACGATCACCTTGCAGCTT 15035 28 100.0 32 ............................ TTTAACCATGTCGGTGTTAAAAATCATTGGAA 14975 28 100.0 32 ............................ TTACGGCAATGGCCGTGTTAATAAAATCGTGT 14915 28 100.0 32 ............................ GTGATTTTCTCACCGGATACGGTCACAGATAA 14855 28 100.0 32 ............................ AGACTGGCGCTTGGCTTTATTGTCCGTTTCAA 14795 28 100.0 32 ............................ ACTTGCATCAGTTCTGACAGCAGAATGAGTAC 14735 28 100.0 32 ............................ TCCGACTGCACCGCAACCAGGTCAGACGGCGC 14675 28 100.0 32 ............................ GCTATCCGTTTTCGATTCTCAATCATTCGATC 14615 28 100.0 32 ............................ TGACCGAAGATCACAACGGGGTAAACGTCTGC 14555 28 100.0 32 ............................ TTTAATGGCTTGGGTTGGAACGGTCTCTTCTT 14495 28 92.9 0 ......................G.A... | T [14475] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATATTATGGTTGGGGTTATTTAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGTTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCTGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //