Array 1 927456-928149 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ269271.1 Escherichia coli strain 6-121 aervC-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 927456 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 927517 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 927578 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 927638 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 927698 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 927758 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 927818 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 927880 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 927940 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 928000 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 928060 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 928120 28 85.7 0 ....................A...C.CT | T,C [928140,928144] ========== ====== ====== ====== ============================ ================================== ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 939167-940254 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ269271.1 Escherichia coli strain 6-121 aervC-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 939167 28 100.0 32 ............................ TTCTCTTACAGAAGGCACCGGGAGGGCACCCC 939227 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 939287 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 939347 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 939408 28 100.0 32 ............................ GCATATGAGATGAGCGAGCGATAACGCCTTTA 939468 28 100.0 32 ............................ CGATGAGCTGTCGATGAGTCGCCCTGCGCCCA 939528 28 100.0 32 ............................ GGTTACGCCAACCCTGCACAGTTCACCACCCC 939588 28 100.0 32 ............................ ATCGAGATGGAAGACGAGCACGGCACCAGTTA 939648 28 100.0 32 ............................ GACCTGAATCCCAAACCTACCACCCACAAAAA 939708 28 100.0 32 ............................ GCTAATGTCTGCGGAGTATGAGATCGCGCTCC 939768 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 939828 28 96.4 32 .............T.............. ACGCCCAGCGACTGACACCGATTGTGGTCCCG 939888 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 939948 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 940008 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 940068 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 940128 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 940227 27 85.7 0 ...G...A...............-C... | T [940247] ========== ====== ====== ====== ============================ ======================================================================= ================== 18 28 99.0 34 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGAAGCAACAGCAGGTCGCGGCGTATATTTTGGCGGCTCAGATTTTGCCTGCAAATAACGTTTAACCGTATTGCGGGAGATCCCCAGTTCTCTGGCAATCGCCCGGCTACTCATTCCCTGCTTGTGCAGGATTTTAATTTCCATAACTGTCTCAAAAGTGACCATAAACTCTCCTGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACATGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //