Array 1 6450-4895 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHT01000006.1 Listeria monocytogenes strain FSL L7-0680 NODE_6_length_242796_cov_33.183991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6449 36 100.0 30 .................................... TGGGCTATTCTCATGTACTCTTGGAAGTCG 6383 36 100.0 30 .................................... TGTAAAGCAATTTTCAGCGGAATCATACCT 6317 36 100.0 30 .................................... ACTTAGCTAAGTCGTTTGACATGTCTTTGC 6251 36 100.0 30 .................................... CTATGTCCTTTCCGTTACAAATTGTTTCTC 6185 36 100.0 30 .................................... AGTTTTTTCTTTATTCGACCACTTATAAGT 6119 36 100.0 30 .................................... TCTACTGAACCAACAATACTTTCTGCAACT 6053 36 100.0 30 .................................... TATGCTCGCAATTATTGTTGCGATTGGAAT 5987 36 100.0 30 .................................... GTATTCATGTATAATAAAATCATTTCCATC 5921 36 100.0 30 .................................... ACTTGTTTCTGCTTTTGTTTGTTGCAAGTA 5855 36 100.0 30 .................................... ACTAGTAGCAAAAGCACAAAAGAAAGTCGG 5789 36 100.0 30 .................................... ATAGAAGGCAATATTTTAAAGGGAAACTTA 5723 36 100.0 30 .................................... AGCAACCTACAGCAATTAAGAAAGCGCAGT 5657 36 100.0 30 .................................... TTATCAAGAGTACTTAGATAATTATGATCC 5591 36 100.0 30 .................................... AAATTTGATTGATGGCAAATATTGGACCTA 5525 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5459 36 100.0 30 .................................... CTGCGACTTCTATGTACTCAATGTTTCGCT 5393 36 97.2 30 ........T........................... GCTGAAATATTGCGATTTACGTCGGTTGTC 5327 36 100.0 30 .................................... CGGCCGCGGTGATTGGTTTAGCGGAATACG 5261 36 97.2 30 ........T........................... ACCTCTTTTGTAAAGTAAATTACGCAATCA 5195 36 100.0 30 .................................... AAACTCGTGAACGTCGTCAGCGTAAACCTC 5129 36 100.0 30 .................................... TCCTTGCATTTCTGCGAGAAGAATAGATAT 5063 36 100.0 30 .................................... TTTATTACATTTATATTAGCTCCCAGCACA 4997 36 100.0 31 .................................... TTCTTTTTTTTTGGTAAAAAGAAAAGCCCGG 4930 36 69.4 0 ........A.........A......A.C.ATGTCTA | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACTATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGGAAAAATTCTGCGAG # Right flank : AGAAACAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCTTGCTCAACCACTACAAAAGAAACCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAGCAAGTAGAAACGGAATCTATTTTAATTAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAACAGGGAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTACTAAACAAATAAAACTCTCTCGTCCGCAGAGAGTTTTTTCTTTTCTCAAAAAAACAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 288319-288608 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHT01000003.1 Listeria monocytogenes strain FSL L7-0680 NODE_3_length_477070_cov_28.312367, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 288319 29 100.0 35 ............................. TGATCTGGATAAGTTACATATAGTTCACATTTGAC 288383 29 100.0 37 ............................. ACAGTCGCATACTTAGCAATTCTTTTCATGCTGTCCT 288449 29 100.0 36 ............................. TGAAATGCTTTGATTGCAACCACATATCCATCCCGG 288514 29 96.6 37 A............................ GAAAAAGCACTTTTCAATACTCGTTCGTTTTCTTTTT 288580 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 95.2 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTAGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //