Array 1 52-506 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNS01000797.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1569 NODE_797_length_1512_cov_1.25333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 113 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 174 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 235 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 296 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 357 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 418 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 479 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6637-7641 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNS01000157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1569 NODE_157_length_7655_cov_1.10161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6637 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 6698 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 6759 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 6820 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 6881 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 6942 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 7003 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 7064 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 7125 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 7186 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 7247 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 7308 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 7369 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 7430 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7491 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 7552 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7613 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : ATGCCGGCGGTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2835-3351 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNS01000414.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1569 NODE_414_length_3387_cov_0.99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2835 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2896 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2957 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3018 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3079 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3140 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3201 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3262 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3323 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //