Array 1 2059783-2061436 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025834.1 Akkermansia muciniphila strain EB-AMDK-19 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2059783 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 2059848 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 2059913 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 2059977 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 2060042 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 2060107 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 2060172 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 2060237 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 2060302 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2060367 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 2060431 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2060496 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2060561 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2060626 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2060691 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2060756 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2060821 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2060886 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2060951 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2061016 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2061081 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2061146 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2061211 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2061276 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2061341 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2061406 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2553201-2549619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025834.1 Akkermansia muciniphila strain EB-AMDK-19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2553200 33 100.0 33 ................................. GATTGCGTAGGGCCGCATGTACGGCTTAACATA 2553134 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 2553067 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 2553000 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 2552933 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2552866 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552799 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 2552732 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 2552666 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 2552599 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 2552532 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 2552465 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 2552397 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552330 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 2552263 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 2552195 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 2552130 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 2552062 33 100.0 34 ................................. AGTAGCAGATTGTGAGAGTTTCCGGCTTGTGATA 2551995 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2551928 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2551862 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2551796 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2551729 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2551662 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2551595 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2551528 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2551461 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2551395 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 2551328 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 2551261 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 2551194 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 2551127 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 2551060 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 2550993 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 2550926 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 2550859 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 2550792 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 2550725 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 2550657 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 2550591 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 2550524 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 2550456 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 2550389 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 2550322 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 2550255 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2550187 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2550120 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2550054 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2549987 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2549920 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2549853 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2549787 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2549720 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2549697] 2549651 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 54 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //