Array 1 109812-107743 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHF01000019.1 Vibrio cholerae strain N2775 NODE_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109811 28 100.0 33 ............................ CATACGTGGTCAGCCTCGAAACTAAGAAACTTT 109750 28 100.0 32 ............................ ACGAATTGAGTGTGCTCAGGCATACAAAACAA 109690 28 100.0 32 ............................ AACTAAGGAAAGTACCATGAAAGAAACAATCT 109630 28 100.0 32 ............................ GTTGTGTTCAAATGGGCTAAGGCTTCAATCTT 109570 28 100.0 32 ............................ ATCAGTGACTAGTGAACGATAAAAGCGAAATA 109510 28 100.0 32 ............................ TTTCTCAAGGTGGCCGCGCAGGCAGAGGCAGC 109450 28 100.0 32 ............................ ACTTTCAAGCAACTTTTGGAAGGTAGCAGGAG 109390 28 100.0 32 ............................ TCAATAGCACATTTTTTGCGTAGCTGACGGCG 109330 28 100.0 32 ............................ TTTCAGGCATTGAAGCGGCCGAACGTGTTACC 109270 28 100.0 32 ............................ ATATGCTTTTGTTTTGTATGCCTGAGCACACT 109210 28 100.0 32 ............................ GTTTTCACCTTCACAGTTAAAGGGGTCAGTAT 109150 28 100.0 32 ............................ ATTCCGGCGTATTGACCGCATTGCTTGACCTT 109090 28 100.0 32 ............................ ACATGGAAGCCACATACAACACCGACCCGATG 109030 28 100.0 32 ............................ GATCGAATCGAAGCGGGAAAACCTAGCGAGAA 108970 28 100.0 32 ............................ ATTGAGCGCCACATTGGCCGCTTCAATACACC 108910 28 100.0 32 ............................ ATTGATGCAGGCGTGGCTGCGTTGTACGCAAA 108850 28 100.0 32 ............................ CGCACCCTCTCGCAGCTCGTCAAGCGTCCCGA 108790 28 100.0 32 ............................ CATTCGCCAATCTTCTTTTTATCTTCGCATTC 108730 28 100.0 32 ............................ AATACTAAAATCACCGTAAGGGGTTTTTAAAA 108670 28 100.0 32 ............................ ACAAACAGTGAAAGATGCACTTACCCATTACA 108610 28 100.0 32 ............................ AACGACTTCACTGGCAAGGCTGGCAACGGTTC 108550 28 100.0 32 ............................ AAGCCGAATCATATTTTGATGATCGCCTAACC 108490 28 100.0 32 ............................ TGGCTAATAGAAGAGTCATTTAACCCAGAATA 108430 28 100.0 32 ............................ TCTGCGAACCTTTTGGCGCTCGATGTCGTTGA 108370 28 100.0 32 ............................ TTCAATCAGCATGCGGTCAATGAGCTTCTTCG 108310 28 100.0 32 ............................ AGCAGGTGCCGCCATTCTCTTTTCTTATCCAG 108250 28 100.0 32 ............................ GCTTCATAGTTCGCTTCGGTCAGTGCCGCTTT 108190 28 100.0 32 ............................ ATACAAATTCGCGCCAATGGCCGCGACTTTAC 108130 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 108070 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 108010 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 107950 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 107890 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 107830 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 107770 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38275-44957 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHF01000049.1 Vibrio cholerae strain N2775 NODE_200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 38275 28 100.0 33 ............................ CCAGGGTAATTAAGAAACATGATTTTATTCCTC 38336 28 100.0 33 ............................ TCAGGTATAACAGGAGTGTTCTGGAGTACATCT 38397 28 100.0 33 ............................ CCACAGTGGTTGCGATTGTAACAAGTTTGGTTT 38458 28 100.0 33 ............................ TACAGTCACGAGGTGAGACACCAATTTTTAGGC 38519 28 100.0 33 ............................ TATTAACATTGTATTATTTTAGATCTCCTTTAT 38580 28 100.0 34 ............................ CAATGTCATTGGTGGTGTTGGTGGTCTCGGCCAG 38642 28 100.0 33 ............................ TTAGTTAGTGTTGGCTCAGAAGGCAACACTGAG 38703 28 100.0 33 ............................ CTATCAAACGTCGCTTTTTCGCTGACTGACGTC 38764 28 100.0 33 ............................ TCTGCTCATTACGTGGACCAGGTGGTTTAGGTA 38825 28 100.0 33 ............................ TGGCTAACGAAAGTGCAAGCTGTTCTTGATGAA 38886 28 100.0 33 ............................ TGTGGTTGGGACAAACAGCATGAAGTGTTCCAC 38947 28 100.0 33 ............................ GACTTTCAGTTATCTAAAGCCTCAGAGCAAGCC 39008 28 100.0 33 ............................ CGGGTTACCGCGCTTGCGCAGGTTCTTGTCTCT 39069 28 100.0 33 ............................ CCTCATCTTTGGCTTTTTTGAGCTCATCCGCTG 39130 28 100.0 33 ............................ CCCGTAAACTGGACTCTTTAAGTCACGGAAGGT 39191 28 100.0 33 ............................ CATTGAAACCTTCATCCTTTAGCTGGATATAGC 39252 28 100.0 33 ............................ CATCGAAGTCAAAGGCATTAACCATACTTTCTG 39313 28 100.0 33 ............................ TTAGCTAGCAGCGGAAGCGATGAAGCCTTTGAC 39374 28 100.0 33 ............................ TTTTATTTCTTCTGTTCGTTTCGAAGGTTCATT 39435 28 100.0 33 ............................ TCTGACCGCTCAGGCGAATCTGTTTTCTATGTC 39496 28 100.0 33 ............................ TATTACCTATTCAAAAGCTGACCGTGTATTTCG 39557 28 100.0 33 ............................ TGTTGATAAAATAAATCGATTTATTCAGATTCC 39618 28 100.0 33 ............................ CGTTATCGTTGATTCTCGCGTTATTCCGGCCAA 39679 28 100.0 33 ............................ TAAGTATCGGCTTTGTCTGTTGGCTTTTTGGTT 39740 28 100.0 33 ............................ CGGAACTGTTTCAATTACTCGTTTACCCGATAT 39801 28 100.0 33 ............................ TTTAGTCCTTTTGGCTATTTCAGCTTTGGCGGT 39862 28 100.0 33 ............................ TATTTGCTTATCTACGCTTTCAGGGTCTTGTGT 39923 28 100.0 33 ............................ TACCGTTTCACGGGTTACGCCCATATTGCGGGC 39984 28 100.0 33 ............................ CGGGCAGGCCGCCGCCGCAGTCCATTAGCTGGC 40045 28 100.0 33 ............................ TTCAAAATCTGCCTCAAACCATTCCCCGCAATC 40106 28 100.0 33 ............................ TAGAAAGCGGCACGGCTTGTGATGCTTCAATCA 40167 28 100.0 33 ............................ TACGGTCACCAGCTGGTGTCTAGTAGCGCGTTT 40228 28 100.0 33 ............................ TCAGAAGAATTAGGCAGATTTTTACCTCGTCGG 40289 28 100.0 33 ............................ CAAGAACGCAAACGCCGGGCACGTGAAGCCCGG 40350 28 100.0 33 ............................ CATGGCCCGGTCTTGCCGGCTGGTATCGATGTG 40411 28 100.0 33 ............................ TGGTGCGCGTCCGCGGGGCGCATGCCGAGCTCA 40472 28 100.0 33 ............................ CATGCAGCACCTTGAGATCAGGCTTCTTCGCCA 40533 28 100.0 33 ............................ CAAAAACATGGCTGCTGGACTCATCTGGAACCA 40594 28 100.0 33 ............................ CCACTATGAGGGGTTTGAGCTTGATTCCAAGGT 40655 28 100.0 33 ............................ TGCATTGCCGCTTGGAATTGGTCCTCAGTAAGA 40716 28 100.0 33 ............................ TCGAGAGTCGTTAGGTTCTTGTCGCAGTATTCG 40777 28 100.0 33 ............................ CATGGTTACGCTGCGTGCCGAAGAGCGCTTGGC 40838 28 100.0 33 ............................ CAAATGATTTCAACTTGCTCTGGTTGTCAGCGC 40899 28 100.0 33 ............................ TTAGATAAAGAAATCGACAAGGTGATAAAAGAG 40960 28 100.0 33 ............................ CAAAAACCAAAACTTTCTCACTCAAGCGGTTTA 41021 28 100.0 33 ............................ TTGTTGGGTACGTAGTCGAGTGCAAGGCATGCG 41082 28 100.0 33 ............................ TATACCGTTTTTCAAAGGAGCACGATTTGAGGT 41143 28 100.0 33 ............................ TTGGCTCATGCAAAGTAGCCACCAGCCAAGGCC 41204 28 100.0 33 ............................ TAAAGCTATGACAACGCGGAACAGACTTGTTTG 41265 28 100.0 33 ............................ TCATCGAGTGCTGATGTTAGCTCTATCTGCTTC 41326 28 100.0 33 ............................ TAAGAACCGCCAACAAAAAGAATACTATTTACC 41387 28 100.0 33 ............................ TCGCATTAGCTAAGCGCGGCGTGTTGTTGGGTC 41448 28 100.0 33 ............................ TAAGTCCCGATTCGGGACAAATCAAGAGGAGTT 41509 28 100.0 33 ............................ TCCAGCCAAGCACCAGTAAAAGTAAAATCCGAA 41570 28 100.0 33 ............................ TACGCACCTTGTTGCAGGTTCGAGTCCTGCACG 41631 28 100.0 33 ............................ CCATTCTTTATGCCTAGCTTGGCATTCCATACT 41692 28 100.0 33 ............................ CACCATTGATTACTCTTTTATGAGTTAACCAAT 41753 28 100.0 33 ............................ GAAATACATTGGGTGATTTTGTTTATGTTTTCT 41814 28 100.0 33 ............................ TAGTTGTTGATGTAAGCAGTGACCGCCATGCCG 41875 28 100.0 33 ............................ TTGCTCACCCTTGCGATTTGTGACTTGTTCACC 41936 28 100.0 33 ............................ CAAAATCCCCCTTGCCAATGCAGCAGGAAAAAT 41997 28 100.0 33 ............................ TAAAGACGTTTGCTCTATTGAACAGTTGTATTC 42058 28 100.0 33 ............................ TCACGTTTGGGACTCCATTCTAAGCGAGGAGGT 42119 28 100.0 33 ............................ CAAGCTCATGGATGATAGCGGCCTTGGTTGCTG 42180 28 100.0 33 ............................ CTTTAAAGAAAGCGGTTTGTGATTTTTTTGACT 42241 28 100.0 33 ............................ TATTGATGAGGCTCACATGGTTGAGTTTTCCGA 42302 28 100.0 34 ............................ TGCGAATGGATTCACAACTCAGCCGCCTAGTTTT 42364 28 100.0 33 ............................ TACGGTTATAGTTAGTTTGTACTAATCCTATGT 42425 28 100.0 33 ............................ TACTAAGTTTACTAAGGGTGAGTGGGTCGCGGA 42486 28 100.0 33 ............................ CGCCGTGATAAGTTCCTGAAGGCCATGAGTGAT 42547 28 100.0 33 ............................ CTTAGGCAGCAATCGTAAGCTGTACCCGTTTGT 42608 28 100.0 33 ............................ CACAACTGGGGCACACACTCATGAAGTTCCAAT 42669 28 100.0 33 ............................ CTGATTTGCCGACCCACAAATCAGACTCACGAC 42730 28 100.0 33 ............................ TGGTCGACTGATTAACTCAGGTTGTGGAGCTGA 42791 28 100.0 33 ............................ CATCGAAGCCATGTTTAATGCCATTTATGGCAA 42852 28 100.0 33 ............................ TATATCCAACCCCGCAGAAGTGGCTGGTGCTTT 42913 28 100.0 33 ............................ TTTTTGACGCGAAATCCTTCCTATCTAAAGAGT 42974 28 100.0 33 ............................ TTTTTGCAGATAACGTCAGTAAGGCTAAGGAAC 43035 28 100.0 33 ............................ TTGTCAGGCTTTGCAACTTGCCCGCGCACTGGC 43096 28 100.0 33 ............................ TTTTGCATGCAAAATTTTAACACGAGGCAAAGC 43157 28 100.0 35 ............................ TTATCTATTCATACCAACTGAGGAGCGAAACAAAA 43220 28 100.0 33 ............................ CGAGGTTAAAGTAGGCGCACTTGACGACATTAG 43281 28 100.0 33 ............................ TCAACTTATGCACATCCACGCAAGCACGCGCCC 43342 28 100.0 33 ............................ TGATTTGATTTTGATTTACCCAGCAGTAGACGT 43403 28 100.0 33 ............................ CAACCGTCGTCAGTCTTGGCCGCTCACGTTCAC 43464 28 100.0 33 ............................ CCATTTCTTTCTTATTCACCATGTGTCCCTTTT 43525 28 100.0 33 ............................ TTGAAAGTTCTCAAAGAGATTGGCCGCGCATTT 43586 28 100.0 33 ............................ TGCAGCGCTGTTTTGTTTTGCTGGTGGCCTGTT 43647 28 100.0 33 ............................ TTGCGGTGTTGTCATAAATAAAAGCGTCACTGC 43708 28 100.0 33 ............................ TCAATGGCGGCAAGGAGGGGCTATCTGACTCAC 43769 28 100.0 33 ............................ TTACTACATGGTGGGTGTGAAAAATCCAACCAC 43830 28 100.0 33 ............................ TGATGATATCGATCACCTGTTGCTCAGTAAGTC 43891 28 100.0 33 ............................ CGCACAAGTAGAGACGTAAGTATTCGCACTGGT 43952 28 100.0 33 ............................ TTTCATATAGTCTGAGTAAGACAAACCAAGCTC 44013 28 100.0 33 ............................ TCAAGACAATATGGTGCTGAGAATCGATAACTG 44074 28 100.0 33 ............................ CTTATGATGAGTTCATGGCTCGCATCAAAGCCC 44135 28 100.0 33 ............................ CGCACAACAGGCCTGCAACCCTTGATTCAAATG 44196 28 100.0 33 ............................ CGAGCTTGAATATGCCCTTTCTGTCGCGTTTTT 44257 28 100.0 33 ............................ TAATAACGCCGTTAAGCATGGGCTTTATGCGCG 44318 28 100.0 33 ............................ TAAAGTATTGCCGAATGTCAGTAGCCCCATAAC 44379 28 100.0 34 ............................ CTTCTCCCAGCCTTCGAAGCGGCACCAAATGTCG 44441 28 100.0 33 ............................ CGTGCTCCTGCCTGACACTATCGTCGACCTGGT 44502 28 100.0 33 ............................ CCCAATCATAGTCGCGTGCGATTTTAGGCAGGT 44563 28 100.0 33 ............................ CACCCCAGACTTCACTTTTAGTGTGAAGCCATT 44624 28 100.0 34 ............................ CTACGCCTAAGCCAGATTACACACCCGATTATTG 44686 28 100.0 33 ............................ TTCTCGTGATTGATGCGACGGCGCAGGCCATTA 44747 28 100.0 33 ............................ TCAATTTCATTGCCGCCAATGGTTGCCACGTTT 44808 28 100.0 33 ............................ CTTATACTAGACAGTACCAAATCACTAAAAGCA 44869 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 44930 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ =================================== ================== 110 28 99.7 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //