Array 1 3543542-3542855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLE030000001.1 Bradyrhizobium septentrionale strain 1S1 1S1_Contig1_9801003bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 3543541 23 100.0 34 ....................... CGAATTCACGAAAGCCAAATCGAAATTGTTGATG 3543484 23 87.0 40 ..C..C..A.............. GCTATCCCGGAACCTCATTCCGCTGCCGCCATTATTGGTA 3543421 23 100.0 34 ....................... GGTGTCGTGGAAGACCAGAAAACCGTTCTCGATA 3543364 23 82.6 34 ..TC.......A..C........ CGCGTTGAAGAAATCCATGAAGAAGTTGTTGCGG 3543307 23 91.3 34 ...C....A.............. GTTGTCGCCGAACTGGAGAGTCCAATTATTGGTG 3543250 23 91.3 46 ....C.........A........ CGTGTTGGAGAACCCTATTGCGCTGCCGGTAAAGCTGTCGTTGACG 3543181 23 91.3 34 .........C.........A... GCTGTCGGAGAACGAGAGCGTGCCGCTGTTGTTG 3543124 23 91.3 49 ..C......C............. CGCGTTGAGGAATTGGATTTCGGACGGCGCGTGGTCGGTGATGCTGTTG 3543052 22 78.3 152 .....T...C....A-.....A. AACAATGCCGGCGCCATTGAACGTAAGTGTCCGACCGAAGAATACTTCGCCAAGGGTAAACGTATAGGCTGAAGCCCCGGCATTGAAAGTCCAGCCACCGACGCTGGTGCTCGACGCCGAAAACGACAGGCTTGAGCTGTTCGTCACTCCGA T [3543033] 3542877 22 78.3 0 ...-.....G.....AT...A.. | G [3542859] ========== ====== ====== ====== ======================= ======================================================================================================================================================== ================== 10 23 89.1 51 ATGGTGGCGTTGCCGGCCGTGCT # Left flank : CGGAGAGTGCGAGCGAGCCGGTGTCGGCCTGCACCGCCCCTCCGTTGCTCCCGATCTGGACTGCACGGGACGAGGTAAAGCCGGCGCCGCTGACCTCCAGCGTGCCGCCATCGAAAATCAATCGTCCCGAGAAATCCCCAAGATTGGCATCCCCCGAAACAGAGAGCGTGCCTGATGAAAAGGTCGTCCCGCCCGTATACGTGTTGATTCCGGTCAGCGTCAGCGTGCCGGTGCCAACCTTGATCAGCCCGCCGGTCCCGCTGAAAACGCCGGAAACCGGAGTGATAACGCCGGAAAATGTCGTCGAGAGGTCATTGCCGCCGACCGTCAGGGTATTGGCGTCGAGCAGGATGTTGCCGCCCCCTTCGATCGACCCGGCCGTGGTGCCGCCGGTCGTGAGGCCCGAAATGTCGAGCGCACCGGTCCCGTTCAGGATGAAGCGCGCGGTGCCGCCGCTGGCCGTGTCCTGAATCGAAGTCGTGCCACCGCTGTTGGTCGTG # Right flank : GTTGCCGGTGTCCAGTTGGCGACGTTGTTGTAATCGGCCGTCCCCGGGTTGGGTCCACTTTCCGTAGGGTTGAGAACCCAGGTCGCGTCCTGAGCCGCGGCCGGCAGGCCAGTCACGAATAGCGCCACCGTCGCGAGCAACCCGGCACGCAACCAAGCCAGCGTTCGTCGCGCGCACACGCCGTGCTGGTCGGGCACCACAAAAGTTCCCACTGCATTCCCCTGGAGTCACCGCGAAGCGCCCCGCGCGCAGAGTGCAGTAGTCCTGGTCGTCCAGCAATGAAACTGCGCCCCTTCCTGCGGTTTGCTCTCGCGCGTTGCGAATAACCCACAGCTTGAGGTTTAGTCAGTTGCACAGAGTGCCGAACACACTTCACCTGTTCCAGTTGCGCCGAGCTGTATGACCGGTACCGGGCTTAACGGGGCCATCACGATGCGACGCCGACGCCCCAGGCACACGATATTCCACACTCCCGTCTGCTACTGCGGCATGAACCCGAA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTGGCGTTGCCGGCCGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //