Array 1 59-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRG02000076.1 Streptococcus sp. GMD5S Contig_076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59 36 100.0 30 .................................... GTCCTTGTGAAACAGCTCCATCAGCAGCTT 125 36 100.0 30 .................................... ATAAAACCGTTACAATTCCATCTGCAATAA 191 36 100.0 30 .................................... ATCGATGAAAGACTGGCTCAGCTTGCGTCT 257 36 100.0 30 .................................... ATGACCGTTTTAATTGGGCGATGGACATTG 323 36 100.0 30 .................................... TTGGTCCTCAATTGGCTGAACTGGAAATGC 389 36 100.0 30 .................................... TAAATCCTGCGAAGCCTATAATCGACCTGC 455 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ACTCTCAAGATTTAAGTAACTGTACAACTGGTGACACTACAATCAGCAGATGGGTCACG # Right flank : AGCCATGTTATTCATGCCATCCAAAGCCGAGTTTTTGTACTCTCAAGATTTAAGTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 632-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRG02000075.1 Streptococcus sp. GMD5S Contig_075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 631 36 100.0 30 .................................... TTCAGAGCGACCGGACGGGTTGTATGGTCA 565 36 100.0 30 .................................... AAATTAAGTTAGAGATAGGCAATGTACCTA 499 36 100.0 30 .................................... CGGTCATACGTGAAGCATTGCCAAGATTGA 433 36 100.0 30 .................................... CTTTCAAAATTCCTAGGTTCTTCTCATACG 367 36 100.0 30 .................................... CAGGCGCCTATTACACTCATAACCATCAAG 301 36 100.0 30 .................................... TCCTTTCTTCTAAATTTGCTTTTTACATTT 235 36 100.0 30 .................................... AGAAAATTGGAAATTTAGATAAATTTTATG 169 36 100.0 30 .................................... TAGACCTCAACCAATCGCTGATTGAGACGC 103 36 100.0 30 .................................... CCTGTACCATGGTTATCCGTCGGATGATGT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : A # Right flank : CA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 58-687 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRG02000005.1 Streptococcus sp. GMD5S Contig_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 58 36 100.0 30 .................................... AGTTGCTGATGTGTTTTTCATATCCAGCCA 124 36 100.0 30 .................................... TAAATCTAAAAATTAGAAAAACCACCAAGC 190 36 100.0 30 .................................... TAAAATATCGAGAAACCTGGTATTTCATGG 256 36 100.0 30 .................................... AAGATAGCCACAATAGCATCCCAAATGCTT 322 36 100.0 30 .................................... AGGTGATACAACAGGAATCTGAGGCGCTGG 388 36 100.0 30 .................................... TCAAAAGAGAGTCGCTCTTGGTACCAAGTA 454 36 100.0 30 .................................... TTATGTGGCAAGCGCTAACTACTACAGATA 520 36 100.0 30 .................................... CCGTGAAATTAGTAGTGTTCAAAGGTGCTA 586 36 100.0 30 .................................... ATGCTTGTATTCGCTTTATGGAAATCCTCA 652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CTCTCAAGATTTAAGTAACTGTACAACCCTGTACCATGGTTATCCGTCGGATGATGTG # Right flank : CACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGGGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTCTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8021-9519 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRG02000064.1 Streptococcus sp. GMD5S Contig_064, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 8021 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 8082 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 8143 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 8204 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 8265 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 8326 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 8387 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 8448 28 96.4 33 ..........................T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 8509 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 8570 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 8631 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 8692 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 8753 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 8814 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 8875 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 8936 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 8997 28 100.0 33 ............................ CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 9058 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 9123 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 9184 28 96.4 33 ............G............... TGTAGACACATCCACAAGCTGGACAATCCCTCT 9245 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 9306 28 92.9 33 ............G.A............. CTGATTATCTAGCCCCATCTCATAGATGGCCCA 9367 28 100.0 33 ............................ TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 9428 28 92.9 33 ............G........A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 9489 28 92.9 0 .....................A....A. | G,T,C [9506,9512,9516] ========== ====== ====== ====== ============================ ===================================== ================== 25 28 94.9 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTCGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGTCACATGAAGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 149238-151714 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRG02000003.1 Streptococcus sp. GMD5S Contig_003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 149238 36 100.0 30 .................................... CCATTGTTGAGGACGAAGTGTTCAATCAAG 149304 36 100.0 30 .................................... TTCCACAACTGAGTAACCGATAAAAAAGCA 149370 36 100.0 30 .................................... AGTTCTTGACTGTGATATTTGCTCCTGAAC 149436 36 100.0 30 .................................... CTCGTTCCCATTAGATGTTTCAAACACCTT 149502 36 100.0 30 .................................... AACATTGATATTTCAACCTTTCTAAGCATT 149568 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 149634 36 100.0 30 .................................... CGCCCGCTGGGAAGAAGACCCACGCATCAT 149700 36 100.0 30 .................................... CCCAGTCATAATTATCCCAACCAAAAACTC 149766 36 100.0 30 .................................... CATTATCAAATAATCTTAGTCAGATTGAAC 149832 36 100.0 30 .................................... AACTTCGTGCTAAAGGTTACATCAAGGGTA 149898 36 100.0 30 .................................... CTGTTTCAGACGATGGAGATATTTCAACAG 149964 36 100.0 30 .................................... TTCTATTTCTATAATCATTATAACACAATT 150030 36 100.0 30 .................................... TAACAGGTTTACTTGATGGATTGGCGCTGG 150096 36 100.0 30 .................................... AAAGCCCCATCTTTACTCACCTCCTTTCTA 150162 36 100.0 29 .................................... AGAGTATCATACGAGCCTTGGGATCAAAA 150227 36 100.0 30 .................................... TAGCCCGTCACTTTATTATATCAAACGCAC 150293 36 100.0 30 .................................... CTTTTGCTAGCTTGTACGATATTTCACTAA 150359 36 100.0 30 .................................... CCATCATCAGAATAAGTAAAATCCTGAAAG 150425 36 100.0 29 .................................... ACTGAAAAAGCTGTCAAGCTTACTGCTCC 150490 36 100.0 30 .................................... GATAAGCTCATCCACATTGTTAAAACTTCC 150556 36 100.0 30 .................................... CTAAAGCATGGTACGGGGATAAGTTTTCTG 150622 36 100.0 30 .................................... AACGCATTAGATTTCTGGAAGATGAACTGT 150688 36 100.0 30 .................................... CATATTCCTATCATTTAGAAGTTAAACGTA 150754 36 100.0 30 .................................... GAGAACATCGTGGAGGAAGGAGAATAACAT 150820 36 100.0 30 .................................... TTAAGGGCGCTGGTATGACACCAGAGATAA 150886 36 100.0 30 .................................... AATGTGTCAACTCATTCACAAGCGGGATAC 150952 36 100.0 30 .................................... TGAAGGATGATGGCAAATGGTACTACCTAA 151018 36 100.0 30 .................................... GGTTTTTAAATTGTACTTTTCCATAAAGAC 151084 36 100.0 31 .................................... AAGCGATATAGATAATGCTGAGCAGATCAGG 151151 36 100.0 30 .................................... TTTTGGTAAAAAGCACTCTGAAGAAACAAA 151217 36 100.0 30 .................................... CTTTCCTATAATGTAAACCAACATTTAGGC 151283 36 100.0 30 .................................... ACCCTGACGGGTCTTATCCAAAAGAAGAAT 151349 36 100.0 30 .................................... AAATCAGCAGTCTAACAATTAAGTTTCTTA 151415 36 100.0 30 .................................... TGTTTCCATAAAATTCTCTTTGTTCTGGCC 151481 36 100.0 30 .................................... TACAACAAGACAAAGGACGTAGGGACATTG 151547 36 100.0 30 .................................... TAACACGAGAGTTAAATAATTGCTTTGGTT 151613 36 100.0 30 .................................... TGGTGACACTACAATCAGCAGATGGGTCAC 151679 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : TTCAGAGCGACCGGACGGGTTGTATGGTCAGTTTTTGTACTCTCAAGATTTAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //