Array 1 216538-217969 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPY01000008.1 Salmonella enterica strain 16E078 NODE_8_length_218142_cov_22.3123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216538 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 216599 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 216660 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 216721 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 216782 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 216843 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 216904 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 216965 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 217026 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 217087 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 217148 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 217209 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 217270 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 217331 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 217392 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 217454 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 217515 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 217576 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 217637 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 217698 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 217759 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 217820 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 217881 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 217942 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTGTAATGACCCAGCCGTTCCTGCACAACTAAGCGGCTTCGGCATAGGCCTGCGCCGGTGTTTTCATCTTTAGCGCCTGGTGAGGACGCTTCTGGTTGTAAAACTGGATCCAGTCGCCAATCACCCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16217-18181 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPY01000022.1 Salmonella enterica strain 16E078 NODE_22_length_75891_cov_22.2285, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16217 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 16278 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 16339 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 16400 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 16461 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 16522 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 16583 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 16645 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 16706 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 16767 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 16828 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 16889 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 16950 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17011 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17072 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17133 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17194 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17255 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17316 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17377 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17438 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17500 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17603 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17664 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17725 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17786 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 17847 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 17908 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 17969 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18030 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18091 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18152 29 96.6 0 A............................ | A [18178] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //