Array 1 3669272-3668510 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3669271 32 100.0 34 ................................ CGGTTGACTCTCCCAGGTAATAGTCAATCGCCTT 3669205 32 100.0 34 ................................ GAGAATTTGCTTGTTGAATTTCAGTATACACAGA 3669139 32 100.0 36 ................................ AGCTACCCAACGTAAATATCTCAAGTGTTCGATCAA 3669071 32 100.0 35 ................................ TTGCCTCTTTTAATAACGCCTGATGCGCCGCTTCA 3669004 32 100.0 33 ................................ AAAAAGTACAAATTATACTAAAGCATCTATTAA 3668939 32 100.0 34 ................................ AAAAGTCAGGATTGGAAAAACAGCAAGACGGTAG 3668873 32 100.0 35 ................................ GCTTGAAATTGGCAAGAAGCCAGCAAACTTTTTAA 3668806 32 100.0 33 ................................ TCTACTGGAATCCCCATCTATACCAGCTCCTTT 3668741 32 100.0 35 ................................ AATCGCAATGACTCGCGCCTGTATCTCGATGGGCC 3668674 32 100.0 35 ................................ GGAAATGAGTCCGCGGTTTTTTCGAGATACAATAA 3668607 32 100.0 33 ................................ AAATGCATCGCCGCCGTCCGAGCCTTTCATGAG 3668542 32 90.6 0 ..A...........................TC | A [3668514] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.2 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCACACATGAAATCCCAGGGAGGTTCGCACCAAAATTCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : GCGCTCTTCTCAGCTGCCAAACGTTGGTAGCCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTACCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3721874-3720845 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3721873 32 100.0 33 ................................ GCGGATGTTTTGTCGCTGATGTAAATGCCGAGG 3721808 32 100.0 35 ................................ AGTCTGTCACCTCAAATGTAAATCTAAAATCAAGC 3721741 32 100.0 36 ................................ CAGGTAGTAGGCTCCTTTACAGCGCGGGAATTTGAA 3721673 32 100.0 34 ................................ TAAAAATCCAAGGTACTTGTTCAGTCGCCGCAGA 3721607 32 100.0 35 ................................ AGACATTTCCATAGTTTTTCTATTTTTCTTTGTTG 3721540 32 100.0 35 ................................ TAGTATCTAGAATCGGCATATCCAAAACGACTATA 3721473 32 100.0 35 ................................ TCATTTTTATCACCTTCCATATTTTAACTTTTAGT 3721406 32 100.0 35 ................................ TTGCATTCCTTTGACTAAGCCTTTGATTGCTTCTT 3721339 32 100.0 33 ................................ TTGTGTGTTCATAGGGTTTTCACCACCGTTTGT 3721274 32 100.0 34 ................................ GTCGTGGACTAACCACTCAGACAATTCTTGTTTT 3721208 32 100.0 34 ................................ AACCTATTGACACCCGGCTGCAACTTAAACCAAT 3721142 32 100.0 36 ................................ AAAAGCGAGCGCTGCAATCCAAGCATCAAATGCAAT 3721074 32 100.0 34 ................................ CACTATCACGGTGCCAAAATACAAATACATTGGT 3721008 32 100.0 33 ................................ ACAGCTCCTTTTTGGTTCAAATAACCTTCAAAT 3720943 32 100.0 34 ................................ TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC G [3720931] 3720876 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTATTTCGTGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTGTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAACCTAAATATGAAATAATATGTGTAATATTGTTTAAATGTCGTTTGTGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : CCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGGAAAACTCCTGGCTCTGTCTGCTCTTTTTAAGAAAGTACAAACTCCCTTGGATTTGCTAAATCATGATTAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3729522-3728825 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3729521 32 100.0 33 ................................ ACAGTGGATTTAATTCCCGCTTGAAATCCTCGC 3729456 32 100.0 33 ................................ TGTTGGCTTACCAACAGTTCTCACGCTGTTAAT 3729391 32 100.0 35 ................................ CGCTTACGTTACAAAGATAAAACCACAGGGGAGTG 3729324 32 100.0 37 ................................ ACTCGTCAATCTGTGCCTGTAGTCCATCAAGGATATT 3729255 32 100.0 34 ................................ TAAACGACGAATAGGGTCTAGACTTGCGTTTGCT 3729189 32 100.0 34 ................................ ATCGTAGTTGGTGGCAGTATTATGACGCCCCTCC 3729123 32 100.0 35 ................................ CTTACCCGCCCCGGCACCTTTTCGCGTTCTAAATC 3729056 32 93.8 34 ..........TA.................... AGTAAATTTAGTTGGACGTTTGACAAAAGACCCA 3728990 32 93.8 34 ..........TA.................... TCAGGAATTTGGGCTACCCACAGCTTTGCCCCTC 3728924 32 90.6 36 .C........TA.................... GAAAGAACGATAACTTCATGTGTTCCAAACAGCAAC 3728856 32 93.8 0 ..........TA.................... | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 97.5 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CATCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATTTAAGTGGGATTAGAAGGATGAGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATTACCCGCACCAAAAAAGAGTGCAAATATGAGCTAATGTGTATAAAGATGTGAAAATGCGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGAAAATAGGGGAATTTCGCT # Right flank : TTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTTCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCATTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCGAAGTTCGGAATGGCGCCATTGTTTTCGACAATCATTAACATCCGT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3740347-3739180 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3740346 32 100.0 34 ................................ CCTCATGGTATTTGTACAATTTCTTGAAATGGCC 3740280 32 100.0 35 ................................ CGCCCCAAATATTGTGTATTTACTCAACTGCAGCA 3740213 32 100.0 34 ................................ CGCCTAATCCATCAATCGCGTCTTTTGCCCCCTT 3740147 32 100.0 36 ................................ TGCATCGATACCCTCTTGTGTGGTAAAGCGGTCATC 3740079 32 100.0 33 ................................ TCTTTTGCGTAATGAAGCAATTGCCTATCATTA 3740014 32 100.0 34 ................................ ACCTAATGATGTACCCACAGGAATACAGGCTTGA 3739948 32 100.0 35 ................................ TCTTACGTTCTGAGGCGGAAGAGATACTAGGCTTT 3739881 32 100.0 35 ................................ ATATGCCTGCACAAAATGACCACGCAATGCGTTTT 3739814 32 100.0 36 ................................ TGTCCACAATGTTGGCCACTATGATGATGCCTAGAA 3739746 32 100.0 33 ................................ ATTGTAGAGGCGACACTGTTCGCGATGCCTCTA 3739681 32 100.0 36 ................................ AGGAGGCGGTTCAGGCGGTTCAGGCGCTTCAACGGT 3739613 32 100.0 34 ................................ TCGATCAACGTTAAGATCGCCTTTGTGTAGTCCT 3739547 32 100.0 34 ................................ CATTACTTGTTTCTTCTCAGCATGAATTAACAGA 3739481 32 100.0 35 ................................ TGAACAACCACTTGTCCATCCTCATCCAAGATGAC 3739414 32 100.0 34 ................................ CTATGAATGACGAAGTGAGAGAAAGAAACATAGA 3739348 32 100.0 35 ................................ TCCGCTAGACGCTCGATAAAATCCACTACCAATCA 3739281 32 100.0 35 ................................ GCAGGACGAGTTCAGAGTTTCGACGGAAATTTGAT 3739214 32 90.6 0 .......................C..C..T.. | C,AC [3739182,3739189] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTTGTAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTAGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACTCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCTCAATAAGTAGGGGAAATTCGCT # Right flank : TTGTAGAAAAAGTCACCCTCGTTGGGTAGGCGTAGATTGAAGACGTCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTTCAACATCCGCTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCCAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTTCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATCCAACAGGAATATCTACACCCTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCTGGTCTGGTTTTGGGCGATGATCGTATGGAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3741604-3741106 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3741603 32 96.9 34 ........................A....... TACTCAGACAAAGACAAAGACAATCCACTTTTTG 3741537 32 96.9 35 ........................A....... CTGAATTATGCGCTAATGGAATAGAAGACGGTACC 3741470 32 100.0 34 ................................ GTGGGTCTTGACTACTGTATCATTCGAAAAGCTG 3741404 32 100.0 35 ................................ TCGACGAGACACCGCATGTCTTACGTCTTATTATG 3741337 32 100.0 34 ................................ AAAACGCGGTTTTAAGACTAAAGCAGAAGCCAAA 3741271 32 100.0 35 ................................ TTTTGTGGCGAACGTGCTGCGTATTTCATACGTCA 3741204 32 100.0 35 ................................ CCTTTTATAAGTCTTGAAGGATTTTGGATCGATGT 3741137 32 96.9 0 ........................A....... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.8 35 GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT # Left flank : GCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTGCAAAATTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAGTTAACATCATTAAAACTTGAACTAAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTATCGATTAGGAAACAACTATAAATCGAAAGTGGAGCACATTGGTGCAAAACCGACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGGACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATTAAAATATGTGTTAACGTGTATTAATTTGAAGAAAGATGTTATTGGTTTTAAAGGATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATGGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTATCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT # Alternate repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3752131-3751899 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3752130 32 100.0 35 ................................ TCATCTTTCCATAAATGATATAGTGGTAGATACCC 3752063 32 100.0 35 ................................ GCGGCGTCTCCTAAAACGCAAATCGATTCTATTTT 3751996 32 100.0 34 ................................ CATACTTGCACCATGGAAATCAATATGTCGTCCG 3751930 32 96.9 0 G............................... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 99.2 35 ATCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CGGGTTAATGGGCATCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGGTATAAGTAGCCGGCAGGCTTTGTATTTTTGGGGAAAGCACGTAATTATGAGTGGCGGTGAGGCCAGTGTTTGTGGAATGGGCGATTGCTTGCAAAAAGACATTAGATTTTGATCTATGATCATTAAAAGTGGAGGACGTGATATAATTTGGATAGTCTGACACGCTGAGAGGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTCAAATATGAGAAAATATGTGTAAAAGTGGTGAAATGTTGTTAGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCTTGCAGGGATCCGAGCTATTGTTTGACTGAAGGTGTGACAGCACCTTCAGTCTTTTTACTTTACTCAT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 3821325-3820779 **** Predicted by CRISPRDetect 2.4 *** >NC_006582.1 Alkalihalobacillus clausii KSM-K16, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================== ================== 3821324 32 100.0 33 ................................ CACAAAGTAACCAAGCTCCGTTTTCATGTAAGG 3821259 32 100.0 33 ................................ TGCCGCCATGTAATCATCTCCTTTTGTATATAA 3821194 32 100.0 34 ................................ TTTGATGCTGGGTTTACATCCATCACCTTGTCGC 3821128 32 93.8 35 ..........AT.................... AGTCCATTCCTGATAGAACTCTTGTTCATTCTCAC 3821061 32 90.6 34 ..........AT.......T............ TGTTCTACGTCGCTTACTCTGTGCAACTTCGTCC 3820995 32 93.8 33 ..........AT.................... GTATTCAAGTTGAGTCATTAAGCATCATTCCTT 3820930 32 81.2 88 ..........AT.C........C.......TC TCTTTGACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAAC 3820810 31 75.0 0 ...........TT........AC...-..TCA | A [3820798] ========== ====== ====== ====== ================================ ======================================================================================== ================== 8 32 91.8 42 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AGCCCAGCAAGCCATTCGGTTAGTTACACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAATAGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAATCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAAAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAGATGTAATAATATGTTCTCATTTGCCGTGCTATGATAGAAAATAGAAGCGAAATCAATCGTTTTCGATTGTTTATTTTCCAGAAAATGGGTAAATGTCGC # Right flank : CTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTGCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACTGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACAC # Questionable array : NO Score: 7.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:-0.66, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //