Array 1 3516244-3512430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051391.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM 22504 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3516243 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 3516182 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 3516121 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 3516060 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 3515999 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 3515938 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 3515877 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 3515816 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 3515755 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 3515694 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 3515633 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 3515572 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 3515510 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 3515449 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 3515388 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 3515327 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 3515266 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 3515205 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 3515144 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 3515083 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 3515022 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 3514961 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 3514900 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 3514839 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 3514777 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 3514716 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 3514655 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 3514594 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 3514533 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 3514472 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 3514411 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 3514350 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 3514289 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 3514228 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 3514167 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 3514105 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 3514044 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 3513983 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 3513922 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 3513861 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 3513800 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 3513739 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 3513678 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 3513617 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 3513556 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 3513495 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 3513434 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 3513373 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 3513312 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 3513250 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 3513189 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 3513128 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 3513067 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 3513006 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 3512945 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 3512884 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 3512823 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3512762 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 3512701 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 3512640 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 3512579 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 3512518 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3512457 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3535791-3534116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051391.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM 22504 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3535790 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 3535729 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3535668 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 3535607 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 3535546 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 3535485 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 3535424 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 3535363 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 3535302 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 3535241 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 3535180 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 3535119 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 3535058 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 3534997 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 3534936 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 3534875 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 3534814 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 3534753 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 3534692 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 3534631 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 3534570 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 3534509 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 3534448 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 3534387 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 3534326 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 3534265 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3534204 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 3534143 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //