Array 1 2428327-2428813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072027.1 Akkermansia muciniphila strain Akk1863 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2428327 31 100.0 34 ............................... TCAAATTCTTGCCTAATCCTCCAAACTGACCCCC 2428392 31 100.0 34 ............................... ATTTGACAAGCCCTTTAAAATGAGTGAGCAGATG 2428457 31 100.0 34 ............................... CCGTCCGCCGCCGGGTAGTTTGAGGGAATGAAGC 2428522 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 2428587 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 2428652 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 2428717 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2428782 31 87.1 0 .....................A..A....TA | G [2428795] ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2631181-2633742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072027.1 Akkermansia muciniphila strain Akk1863 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2631181 31 100.0 34 ............................... TTTTGCTACTTACCATATTGAATCCAATACCATT 2631246 31 100.0 34 ............................... CGTCAACCCCCTGGGCCCCTACACCATTATTGCC 2631311 31 100.0 34 ............................... AAGTCGATACGGTCTATCAAGTCACAGGTCTAAC 2631376 31 100.0 34 ............................... CCTCCCCGTCCAGAACCCCTACTACTTTGACCCG 2631441 31 100.0 34 ............................... GCCTTTGAACGCTATACCAAGGCGGACCCCAGGA 2631506 31 100.0 34 ............................... ACTGTATCAAGTGAACATTCAGTCCGAGTCTCCT 2631571 31 100.0 35 ............................... TTGACGGTATAAAACATAAACGATATAGTGTGGGA 2631637 31 100.0 34 ............................... TTCCGCTAGAGTATCATGACGCCAAAGGCGCGCA 2631702 31 100.0 34 ............................... CATATAGCTGCCGTCTTCGTATTTGTCCGCATAG 2631767 31 100.0 34 ............................... TTTCTAAGGTAGGCTACTCTGGAATTTGAGTATC 2631832 31 100.0 34 ............................... ATCCCGGAAACCAATCAGGAGTACGCAAACGCCA 2631897 31 100.0 33 ............................... GGGACGGCAGGGGCGGCAAGTACCCGCCATCCG 2631961 31 100.0 34 ............................... TTGTTATGCCTGAATCGTGCTTCCGATTTTGCAT 2632026 31 100.0 34 ............................... AGTTTGAAACAGGCTATGCGCCGCTGAAGATTGC 2632091 31 100.0 33 ............................... CTCTTCTGGCTAATGCAGTCGGCAGTCTCTCGA 2632155 31 100.0 34 ............................... ATCAGGGCGGACTGAACATTGCCCCCAATCCGAA 2632220 31 100.0 34 ............................... AGTATATTCTTGGCACCATCCAAATCCCGGTGGC 2632285 31 100.0 34 ............................... AACGCCTCCTGCTCCTCATGGTAGAGCTTTGCCA 2632350 31 100.0 34 ............................... AGAGTTCGAGCAACTCTAACCCGGGATCAGGAAA 2632415 31 100.0 34 ............................... ATTGGTATCCTCCGGCATGTTCTTGACGTAGATT 2632480 31 100.0 34 ............................... CTGTCTGCAACGGGTCTTCCGGGTTAAGACGGAT 2632545 31 100.0 34 ............................... AGAGTCCAAAAGATACTGTTTTGCGCGGCTGGAA 2632610 31 100.0 34 ............................... CTTAGTAGTTCCTCAGCCTTGGATTGCATTGCTA 2632675 31 100.0 34 ............................... TAATAGTTGAATGTTAGTGTGTTGTTATTCTCCG 2632740 31 100.0 34 ............................... CATCTGGGCGGCGGATTGTTCGTGCATGACGGCA 2632805 31 100.0 34 ............................... CTCAACTTCACGCGCTATGTGGTAATCCTCCATA 2632870 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 2632935 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 2633000 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 2633065 31 100.0 34 ............................... TTCCGGATGGCACGTCAACAACGGTGGGCGTGAT 2633130 31 100.0 34 ............................... CGGAGGCCCACGGGCGCCGGGCGGCTGATTATCG 2633195 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 2633260 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 2633324 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 2633389 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 2633454 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 2633519 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 2633584 31 100.0 33 ............................... CTGTGTCAGGGTCCGTGATGGTCCTGGTTTCGA 2633648 31 100.0 33 ............................... TCCTCCAGAAATTCCACAAAGTCCTTCTGGCTC 2633712 31 87.1 0 .........A................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 40 31 99.7 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : TGTCGCAGACTGAACGGCCTACTATCTCTGGAATGAGAAGGAGCAGTTGGCTATAACACTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTTGTGAAAAGAAACAGATCAGAAGCCTTCAATCATTTCCGGGGTTAACCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGACTTCAATGGAATGGTGAACCTTGGCAGAAGAGTATTGACCGCTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTACCTTCCGGTCGTGCAGAGGAGGCATCTCCTTCAAACATCTGAGGAAGCGCTTGTTTGAAAATGGATGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGCGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTACTGCCGTCTCCGTCATTGCTGACGCTTTTCGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2642215-2644187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072027.1 Akkermansia muciniphila strain Akk1863 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2642215 33 100.0 33 ................................. TCATTTACCACAAGATTTTTATTCAGGGATCGC 2642281 33 100.0 34 ................................. GGGGAGAAAAGCTTGCCGTGGCTCCCGGAATCAC 2642348 33 100.0 34 ................................. AAGGGATCGTATAGCATCCTCGTTGAGGCTAAAA 2642415 33 100.0 35 ................................. ATCACCTCGTCGCCTGGCGCCGATTCCGGCACCTT 2642483 33 100.0 33 ................................. ATTTGGTCATTGCCCAGGAGGAAGCTCTTACGA 2642549 33 100.0 34 ................................. TGGTAACAAGACCTTTACTGGGGGAGTTATGAAA 2642616 33 100.0 34 ................................. CCACGCCTGGGCATCATCCTGTCCATAGAGAAAA 2642683 33 100.0 34 ................................. CTTCATCGGGGCGACCAACGAGCCAAAGCCTTTG 2642750 33 100.0 34 ................................. CCGGCTTTGAGGGCCTGTCTGACGATAAAGACAT 2642817 33 100.0 35 ................................. CCCAGCTTCCCGGAGCTTCTGCCCTGGATACAAAT 2642885 33 100.0 34 ................................. CGGGAGCTGGAGACACAGGGCCTGATGGAAAGCA 2642952 33 100.0 34 ................................. TTTCAAGGGCGTCATCCAAGCAAAGATTCTCTAC 2643019 33 100.0 33 ................................. GTGGCGGCTAGGGATATTTTCTTTCCGTTACTC 2643085 33 100.0 34 ................................. CAGATACCAGCGTGCTTTCTTGAGGTCTTCAATA 2643152 33 100.0 33 ................................. GTTAAACTACAAGTAAAACAGCTGTCAAGAAAT 2643218 33 100.0 33 ................................. AAGTTCAAACTGTTGCATCACCTTGGTCATCAG 2643284 33 100.0 34 ................................. GTCGCTGGTCAGATGCTGGTTGATGTAGGCCCTA 2643351 33 100.0 34 ................................. GTCCCGGTAGCTGTAGTAGGCACTGGCACTGGCC 2643418 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 2643486 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 2643553 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 2643620 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 2643687 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 2643754 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 2643821 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 2643888 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 2643954 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 2644021 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 2644088 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 2644155 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 30 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3088517-3086143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072027.1 Akkermansia muciniphila strain Akk1863 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 3088516 31 100.0 36 ............................... TCATATAATAATTTACTAATACTAAAGCTTTTATGC 3088449 31 100.0 34 ............................... TTGTATTGATTTTTAACGAGTTATGAAGACGGAT 3088384 31 100.0 34 ............................... CTTTCTACTTGTTTTTTGATTCCGGCGGGCAGGA 3088319 31 100.0 35 ............................... AAGGGATCGTATAGCATCCTCGTTGAGGCTAAAAC 3088253 31 100.0 34 ............................... CGTCAATCCGGGTCCGGGCACTACCCGGGATTTA 3088188 31 100.0 34 ............................... AGCAACTTAACCGCTTTACCAACTCGGCTCTTGA 3088123 31 100.0 34 ............................... TCGACCGTCTCGTATTCTGCCCCGGTTTCGCCGC 3088058 31 100.0 34 ............................... AAATTCCTATTGCATCCCTGACGGAACCGAATCT 3087993 31 100.0 34 ............................... GAGGTGCATGACATGTAAATGGTTTGAGGTATGG 3087928 31 100.0 34 ............................... GATAAGGAGGATAAGGAGCAGGAAGGGAAGGAAG 3087863 31 100.0 34 ............................... ACAAGACTCTTGAATTATGGATATCATGGTGCTG 3087798 31 100.0 33 ............................... CATCAAGGTTGAATTGGAAGCCGGGAACCGGGA 3087734 31 100.0 33 ............................... TACTTCAGATAAAGATCAGCATCCTTTTCCGAG 3087670 31 100.0 34 ............................... TACCTACAATTCCTACGTCAACGGCCAGACTGTC 3087605 31 100.0 34 ............................... CTTTGCAATATATGTTTGCACTGCACGACGGAAT 3087540 31 100.0 34 ............................... CTTTGCATCCCCGAATCAGGGAATCAAGCTGATG 3087475 31 100.0 34 ............................... GACAGCGTGGGGCTGAGCAACGACTTGCTGAACG 3087410 31 100.0 33 ............................... CGTGGATACGTGCAGGAGATGTCTGACATTTAC 3087346 31 100.0 34 ............................... GTGCAAGGCGACTACATAGCCGTTCCATTTCAGC 3087281 31 100.0 33 ............................... GGAGCAGAGGACAAGGCTCCCGTAGCCCTTGAT 3087217 31 100.0 35 ............................... TGTATTACATTTGAGGGATGATGATTCTGGAGCGG 3087151 31 100.0 34 ............................... CCGTGAAGGGGTTGATGGTACTCAGAAACTTGTC 3087086 31 100.0 34 ............................... CGCCTGCTGTTGAGCCTGCCAGGACTGACGCATG 3087021 31 100.0 34 ............................... ATCAGGGTCAGGGAGTCGGTTGTCATGCCACAGG 3086956 31 100.0 34 ............................... CTCTTCTACGTCACTCTCGAAATAGTCCTCCCCA 3086891 31 100.0 36 ............................... AATATATGTTTGAACAACTTGCAATTTCTTCTATTG 3086824 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 3086759 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 3086693 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 3086628 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 3086563 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 3086497 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 3086431 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 3086367 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 3086303 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 3086238 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 3086173 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 37 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //