Array 1 12530-10976 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZJ01000013.1 Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 strain VPI DR56BR1116 ctg120007787859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12529 36 80.6 30 T...T.AC......G.G.G................. CAAAAGTAAATAATATGTCGGAAGTCACAG 12463 36 100.0 30 .................................... GTAAACCAGTGTTTTGAGTACGAACTGCTT 12397 36 100.0 30 .................................... AAATTGTACGGATTTACAGTTGACAGTCTA 12331 36 100.0 30 .................................... GTCGGCTTGTGCTATGCACAACATTTAACG 12265 36 100.0 30 .................................... ACCGCATCGGCGCTCAATCTTTTTTCAGCC 12199 36 100.0 30 .................................... GACGGTTGTCCCTAATCGTATATCGCCCCA 12133 36 100.0 30 .................................... ATGCGCTCTCAAAGATGTACGAGCTTGGCT 12067 36 100.0 30 .................................... GGCATTGAGGACGATATGTCGCCATTCATA 12001 36 100.0 30 .................................... GAGTAGTTTTAAATACTTGTTTCCAGATGA 11935 36 100.0 31 .................................... TGAGGTCGATATACTGTTTAAACAGCGCGAT 11868 36 100.0 30 .................................... CGTCAAAATACATATCGACACGTTTTCCCA 11802 36 100.0 30 .................................... ACGGACTTAGGGTAATACATTCTACCGTTG 11736 36 100.0 30 .................................... GTAATCCTTGCCATTGTACATACCTATGCA 11670 36 100.0 29 .................................... ATATTATAGCTATAAAAGATTGTGCAACG 11605 36 100.0 30 .................................... TGAAGTCAGGTGTCGTGGATTTAGCGGTAG 11539 36 100.0 30 .................................... AGATTTCTATAACAAAGCTACAGACAAAAC 11473 36 100.0 30 .................................... CAGACAGATTGTACTTTGCGAGCTCTTTTT 11407 36 100.0 30 .................................... ATAACGGGCATTTTATTACCTAACTCGTCC 11341 36 100.0 30 .................................... TATGATAAAAACGCTGTTATGCAGGCGTAT 11275 36 100.0 30 .................................... GGAGTAAAAAGTGACACGACAAGCGCAGAG 11209 36 100.0 30 .................................... ACAATCATCTTGCTAATATCCGCATCGCCG 11143 36 100.0 30 .................................... GTCGGCGTTTCGACATAGCCCGTGTTTTCA 11077 36 100.0 30 .................................... CCTTTTCGTTTTCTTAATCCATAAGTGCCT 11011 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 99.2 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Left flank : GGCGTTGATCTGGTATATCCTGTGGAACGGTGGAACTGAGCCGAAGCGCGCACGGTTGTTTTGTAATAATGTTATTCGTCATACGTTTGTCGGTGTTAATGTAGAAGGTGAGTGGTTTTACATAGATGCTGAAACGTGCTTACCTATGGGACATCCGTCGCTTCATGATTACAATTATCGTGAAAGCGATAACTGGGAGTTCACGGACTTTATTCTCAGTGCATATAAGATGCTCGGTAAGGGTGATGCTGTGTTGTGGAATAGGCTTCGAGAGCAGCAGGGAATACACGATGACTAATGTGGTACTGTTCACAGGCGACAATGAGTGCGAGATAGCGGCGATGCTTTTACGACAATGCTCCGATGAATGGATAGCTCATGCGCTTTTTGACGCTGCGGAGTTTACGATAGGTCGCGTGTACTATGTTGACGAGGACGTAGTTTAAGGTTGGTAGAAAAAAATTAACTATGGGTAATTCATGCGGTCGCTGTGTTACGGA # Right flank : ACGTCCGGCGTAAACCGTTACAATACAAAGAAATGGTTTGTGCCGGACGTGTTATTTTTAAACGAAAATCAGAATAAAAGAAACTGTTCCGGCTGCTTTTTTTGCCGTTTTTCGCCCGCATTATAACTGATGATATTGCCATACTGTCTGTCCGTTATCGTGATAATATCAACTTTTCCTTTTGTCGGCAAGTTGTCGTGTATCATTTTGTAATATTTTTCGCAAGCATCTTTTCCCGAAAATAATTTTGTATAAATCGAATATTGAACCATTGAAAAACCGTTATCCAGCAAAAATTTTCTGAATTCCGTAGCATCTTTTCGTTCTTTTTTTTCAATGACCGGCAGGTCAAATAATACCATCATCCACATAAGTTCATACTTATTCAAAATCAAATCGCGCATTTTCATCTCCGTCCCATAGGGGCAGTTCGATATCCGGTTTTTTATTTTCCAGCGCACGTGCATAGGCATTTGCCATATATTGCATACTTTGAAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5471-8526 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZJ01000055.1 Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 strain VPI DR56BR1116 ctg120007787809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5471 31 100.0 33 ............................... GATTAAAACTCGGACGAACAGCAAAATAACGAG 5535 31 100.0 35 ............................... CGCAGGTTGTACCTTTGTACAGTCGTAAACGGTTG 5601 31 100.0 33 ............................... CAAATCGTTATTAAAGCGTTTGTCAAACGCTTG 5665 31 100.0 32 ............................... ATCAAAAGCACCAACATTAAAATTACCGTTAA 5728 31 100.0 34 ............................... TTTTGTGACTGGTGGTCGTTCTGGTTCGGATAGT 5793 31 100.0 34 ............................... AACGTGCCGCAATAACTTACTGCCTTGTGTTGGC 5858 31 100.0 32 ............................... CACCCAAGTACACCTGTTGCACCTCTCCACGT 5921 31 100.0 33 ............................... TCCATACGTTAAAATAATAATTGCCCTCGTCTG 5985 31 100.0 32 ............................... CACCGCAGTCGTGCAACGTTATGCGCGTTACA 6048 31 100.0 33 ............................... AGACACCATATAATCATACGCATTGTCACTCAT 6112 31 100.0 33 ............................... TGGACGATGGGACGCCGTGTATACGGCTATCGG 6176 31 100.0 33 ............................... CGCGCAATGCAAAAATCAGTTGAGAAGCATTGC 6240 31 100.0 32 ............................... GTCAAGCATCCACTTTACCTCTAGTAGTAAAA 6303 31 100.0 35 ............................... ACCGAATGCACGGACACGTACATCATTGAGCACAA 6369 31 100.0 34 ............................... ATGTTAGATCACGTATAGTAGATACGCAAAGGAG 6434 31 100.0 34 ............................... AAGTCCGCGCGCGCATACGCGCTCAATCATTTTA 6499 31 100.0 33 ............................... TCCCCCAACCGAGCAAAAATAATACGAACTTTG 6563 31 100.0 32 ............................... TGGCGGGAAAGCTATGTACTACTGCGGAACAC 6626 31 100.0 32 ............................... TGTACAGATAATTATCTGGATTAAGTAATAAC 6689 31 100.0 34 ............................... CATACCTTTGCTCCTTATACATATATAATATAGC 6754 31 100.0 35 ............................... GATATGCACATTACCTATTGACATATCGACATCAA 6820 31 100.0 36 ............................... ATTACTTTTTGGTATCGATTTAATATGGGGTTTAGG 6887 31 100.0 33 ............................... ATAAACGCAGTGGATAAAAAGCAACGCGTGCGA 6951 31 100.0 32 ............................... TTATACGGGTAATTATCTGGATTAAGTAATAA 7014 31 100.0 33 ............................... AAGCTGCATGATTTTTTGAACCAGTGCATGAAC 7078 31 100.0 33 ............................... CGTATGCAAAAATATGTGTCAGCAATGGCAGGC 7142 31 100.0 35 ............................... ACCGAACCCTGTATTTACAGCAACATCGAACTCAG 7208 31 100.0 32 ............................... TAATTTTTTCATTTTTTGCCTCCCTTGCGCAT 7271 31 100.0 33 ............................... CGAAGTCCAACCACTTTTTGCCTACTCTTATAC 7335 31 100.0 34 ............................... AGGCGATATTGAGCAAGATGCTATGAGGGAAGTA 7400 31 100.0 33 ............................... TAACATGTTGTATGCTATGATTAACGTTGCAAA 7464 31 100.0 33 ............................... ACCGTCCCCCCGTTATATTCTGTACTGTTCCTG 7528 31 100.0 33 ............................... TCGCATAAATGTGCGAGACATCATAATCTCGAA 7592 31 100.0 34 ............................... TTGCAAGGAGACGCAATTATTACATGGTACATAA 7657 31 100.0 34 ............................... TCATTTTTTGCCCCCTTTGCGCATTTCGGCGCGA 7722 31 100.0 34 ............................... TTTTGTCATAATAATTTTACTCCATTACCCGCTC 7787 31 100.0 33 ............................... CTCGTCCTCGTCATTTTTGACAATAGCAAGGTA 7851 31 100.0 34 ............................... TTACCGCGTATACCGTAAACCCTGTTCTTACGAG 7916 31 100.0 32 ............................... TGACAACCTAATCCACGATACTAGCGATACGT 7979 31 100.0 33 ............................... ACGAAAAAGCATAAAGACGCCCGCTCTATGCGA 8043 31 100.0 35 ............................... AATGCACAATTTACCGATCACCATGTCCACATCGA 8109 31 100.0 34 ............................... ACAGTGAGCATGGTACCGTTGCGCCATGCACTAA 8174 31 100.0 34 ............................... TTTTTATCGACATCGAGCAACTCGGTTTCGTCTG 8239 31 100.0 35 ............................... ATTTAGCAAATGGATACAAAAAGACAGATTGCCCG 8305 31 100.0 33 ............................... GTACACGGCAACACGGGCAAAATCCATCACGAT 8369 31 96.8 32 ..........C.................... CCTGCCCTGAAAAATAGAGCGGAGCAGTAAGC 8432 31 96.8 33 ..........C.................... GGATGAATTCGGCGGTATGCCGTATACGAACGA 8496 31 93.5 0 ..........C...............A.... | ========== ====== ====== ====== =============================== ==================================== ================== 48 31 99.7 33 GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Left flank : TCCGGTATACCTTTGGAAATAAAAGAGGGGGCGCGCGATGATGATGCTGGTAAGTTATGATGTGGCAAAAGATGAAAAAGGGGAAAAGCGCCTTCGGCATGTGGCGAAGATTCTTGAAAATTACGGACAGCGCGTTCAATATTCCGTCTTTGAATGCTTAGTCGACCCCGCGCAATGGGTTGCGCTGAAAAGTAAATTGCTCAATGAAATAAATCCGAATTACGACAGTATTCGTTTTTACGCGCTCGGTGCAAATTGGGAGCGTAAGGTCGAACACGTAGGGCAAAAGAAACCGATCAATCCGCAAGGCGTTTTGATTTTATAATCGGATTTCTGGCTTTCCGGCCGCGAACGGGAAGCACACATTGGTTATTCATTCCGCTTGAATTTTATAACCCGTTATATTATAGTGAATTAGATATTGACACTGTAGTTTCGGAATGAAGTTCGCGGAAATTATAGTGTAAATATCGATATTACAAAAGAATAACTGCTATACT # Right flank : CTCCTTGTTCGAGAAAAACGTTTTTACAGGAGTTTTCCGAAACACCGGACGCGACGTTTACATTTGACTGCGCATTTTTTTATTCGACAGCATGAGCCCACAGATCGTCAGCACGACACCCGCTATGCCGGGTGCGGTGATCCGTTCACCGAGTGCAAAATACGCGAATACAATCGTCACGACGGGAATTAAATAAATGCCGACGGTTGCACGGACGGAACCGAGCTTATCGCATGCGGTGTTCCACGCAGCAAAACAGAGCGCGGACGCGGCGACGCCGAGAAAGAGCAGATTTATCCAGTTGAGCGGTTTTGCAAAACGGGACATATTGACAGCCGCATCGAACGTTACAAAAAAATTGTTATTGTCTTTTGCAAGCGGTGACAGAGCACCGAAAAGTACGAGCGGTACCATGCAAACGATCGCGTAAAAGAATATATGTCGTACGACTGCCAATTTATTGCAGCGCAACGCGTTGATTTTCGTGACAAAGAGCGTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //