Array 1 1000888-1003295 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019692.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1000888 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 1000949 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 1001010 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 1001071 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 1001132 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1001193 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 1001254 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1001315 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 1001376 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 1001437 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 1001498 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 1001559 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 1001620 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1001681 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 1001743 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 1001804 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 1001865 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 1001926 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 1001987 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 1002048 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 1002109 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 1002170 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 1002231 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 1002292 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 1002353 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 1002414 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 1002475 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 1002536 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 1002597 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 1002658 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 1002719 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 1002780 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 1002841 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 1002902 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 1002963 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 1003024 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 1003085 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 1003146 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 1003207 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 1003268 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1019967-1022013 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019692.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SL180013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1019967 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1020028 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1020089 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 1020150 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 1020211 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 1020272 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 1020333 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 1020395 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 1020457 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 1020518 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1020579 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1020640 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1020701 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1020762 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1020823 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1020884 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1020946 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1021007 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1021068 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1021129 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1021190 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1021251 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 1021312 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 1021373 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 1021434 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 1021495 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 1021556 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 1021617 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 1021678 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 1021739 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 1021800 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1021861 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1021923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1021984 29 96.6 0 A............................ | A [1022010] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //