Array 1 506-102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000731.1 Aetokthonos hydrillicola Thurmond2011 contig_1494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 505 36 100.0 39 .................................... AATTACAGCAGGCATATCTAGATAACCGGCGCTAAATTG 430 36 100.0 34 .................................... TCTTATAGATGCTATGGTAGTTGATCCCTCCATG 360 36 100.0 39 .................................... CCGAGGTCTTCGCGATTTTCGATCAGTTCCGCATGGGTA 285 36 100.0 39 .................................... AATTTTATGTTCCTAAGGAGGGATAAAATTTTCTGCAAA 210 36 100.0 37 .................................... AGTAGCGTTTTCAAGACAAATGAATAACCTTTCTAAC 137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 100.0 38 CCCTCCCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : CTAAAAAGGGGCTGACACGGTGACGCGCTAAAAATTCTATCTCCGCGTCCCCGTTTCTCCCCTCTCCGCGTCAGTCTCAACCCTTAACGAGCGTGCCATTCCTTTCTACACCTCTACTTTGGGGAGGCGATCGGCTAGCGACTGCACTCAAGAGTGCGATCGGCTCTCCAAGCTTGTTTTCAATAGTAACAAATTTTTTACTTTTATAAAGTATTAATTATTACCGTGAAATCTGCTACTAGTTTTTGTGTATAATCTGTTTTAAAGCATTACATTCTCTAGATTTTAGGGATATTCAGGAGGTTTTGTAACATGGTCATCGACACACTCCACCAAATGGCTGAAAACCTATATTTTCCGTTGGAGTGTGTCGATTGCTTACGGGGCAAGCTTTTGAGCCTCGTCTGTTGCTCGATTTTCGACAATTTTTATCCTGTTTTTCAGGAGTGTGTCGATTTGTCGTCTGAAACTCTTACTGTGTAAGGGCTCCCAGACGAACT # Right flank : CGAGGTTACACGTTCTTCGGAAGGAAGTTAAAAAGTCAGCCCACCCGAGTGGAGGGAAGTGGTTGGGTTGGAAGACAAGAGCAAAGGAGGACGATGGGACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCCCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11-1366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000682.1 Aetokthonos hydrillicola Thurmond2011 contig_1388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 11 47 100.0 30 ............................................... CAATTTTTGGAAGGTAAGAGCAGAAAAAAA 88 47 100.0 29 ............................................... ACGGCTTTTAATCTCATCACGTTTAAAGT 164 47 100.0 30 ............................................... CAAAAAGATTCGAACAGGGAGAGACAAATT 241 47 100.0 30 ............................................... AAGGTCATCATTATACGGCACATCATTAGG 318 47 100.0 30 ............................................... AGAGCAACGTAATGAAAGAACGTTTACATA 395 47 100.0 31 ............................................... TCCGCCCTTATATTCAATAAATTCAATTAAG 473 47 100.0 30 ............................................... ATAGCTAAACTGAAAGAAAAAATTGAGCAA 550 47 100.0 30 ............................................... CCAGGCCACTGCAGGCGGGGCTGTGCGAGG 627 47 100.0 30 ............................................... AAATACCCTGACAGCGGATACACGGAAACG 704 47 97.9 30 ..............A................................ GTAGCACATAAGGTAGAATAATCTATAACC 781 47 95.7 30 .................C........................T.... GCCGAGGCCGCGGGGCAGGGTACGACGATA 858 47 100.0 30 ............................................... CAATATACAACCAGCCGGTCCCAGTAAGTA 935 47 100.0 30 ............................................... CGGTAGTCCTTTGACGTGTCTATGTAATCG 1012 47 100.0 30 ............................................... AAGTGTCCTTTCCTGGCATCCTATTCGTAA 1089 47 100.0 30 ............................................... GGTGGTGGTTCTTTGCCCAGCTGGTGCCGT 1166 47 100.0 30 ............................................... TTGTACAGATAGTGAAAGCGGTCAATACTG 1243 47 100.0 30 ............................................... ATGCGGTAAGCGGGGTACGCAACAGCTATA 1320 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 18 47 99.6 30 GTTGTAATCAAAGATCGTCAGAATAGAATTTGAAAGCAAATCACAAC # Left flank : TACGACGATAG # Right flank : GTACGCGTCCAGCAATGTCTTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATCAAAGATCGTCAGAATAGAATTTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 11043-10712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000089.1 Aetokthonos hydrillicola Thurmond2011 contig_167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11042 37 100.0 37 ..................................... TTAGCGGGATTTAATCAATGGCTTTACCTGATGATTT 10968 37 100.0 37 ..................................... TTGCGATCGCCTCTGCTTGTGTCTGGGTAAACTTTCC 10894 37 100.0 35 ..................................... CCATTGTTCTGATGAGCGCTACTCAGCCAGCTTTT 10822 37 100.0 37 ..................................... ATTATTTCTTCTTTACACTCCTTCACTAAATCATGAG 10748 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 37 CTTGAAACCTAACGAATCCTGGCAACGGGATTGAAAC # Left flank : AGTTCCGAAAACGAACGAGCAAGTATTTTTTCCGAAACCTATGGATACGAAGAAATAACTTCCAGTAAGATTCTACCACAACTCGATATTGCTTTACTTGTAAGATGCCTTCTGATTTCTGATCCAATTCGCTCAAATAACGAATTTGAGCAAAATATTTAATCAAATGCAGATTAAGATAGAGAAGTTAATTAAACCAAACGAAGATTCGGTGCTGTGAAACGAACTATTACTTATGGTTCGGAAAAACCTCGACAAAAAGAAGTTATTATTCTATAGTGGTTATATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAAGTGAATAGTTACAGCGTTTGAGAGTTGAGAATAAATAGGAATTTATGTCAATAAGCGAGGCTGAAATAAACCTGTTTTTGAGGTTTGCCAAAAGTGGTAATAGAATCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : GAAACCCGTTCTTTGCCCACGCAAAACTTCTGGGAGCGCCCACTTTATTTGCTATTGTAGAAAGACAAAGGTTAATTATTTCCCCGAAGCAGACAATGGTTGCTTTACCAGATCGCATCTTCATGAGTGCAGAAGAATATCTGATTTGGGAACCAGCCCAAGAGGAACGCTACGAGTATTGGGATGGTGAACTTGTCGCTATGAGCGGTGGTACACGTAACCACAATCGCATTTGTGGAAATTTCTTCAACCTGCTAGATAATGCTCTAGTTGATCGCGGCTGTGAAGTATACATTGTAGATGTCAAGGTGCAGATACAACCGGGGAAAAAGTACTTTTATCCGGATCTGGTGGTGACTTGCGATGAGCGCGATCGCGATCTACAATTGGTGCAATTTCCCAGCTTAATCATCGAAGTGCTATCACCTTCAACAGAAGCAGCCGATAGGGGGAAAAAGTTTGCCAGCTACCGCCAATCTTCTACTTTGCAAGAATATGTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 13701-12342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000089.1 Aetokthonos hydrillicola Thurmond2011 contig_167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 13700 37 100.0 37 ..................................... ACTCATGGATTTATCTGTGGCGACTTTGGGACACTGC 13626 37 100.0 36 ..................................... ATAGTCTATGTGTACGTTCAGCTTCATGGTCTATGA 13553 37 100.0 34 ..................................... TTGTTGAAAGCTGTTAGTTTGAAATTAGACGGCA 13482 37 100.0 37 ..................................... ACCTCAAATATTCCTCTTTCATATTCGATTTTGTCGC 13408 37 100.0 35 ..................................... CGAATAGACCATATCTTTGTTTGATTAGTGTTGTA 13336 37 100.0 35 ..................................... AAAACTTACCCACTAAAGAGCAACTACTAGTTAAG 13264 37 100.0 38 ..................................... AACACAATAATATGTTTCAGCACCACTTACAAAGTCAA 13189 37 100.0 36 ..................................... CATATCATTAGAATATTCCCTCATCCTCTTAGATGC 13116 37 100.0 38 ..................................... TGCAGTAGCCTCAATCGACGCTAATATCTGCAATCAAT 13041 37 100.0 35 ..................................... CTTCAATGTCTCCATCGTCGTATTGCGTGACGATA 12969 37 100.0 39 ..................................... TCCAAAGGGGGAAACTAAGAAGCTTTAAGTTGCCTACAG 12893 37 100.0 35 ..................................... ACATTATGGCTTTAGGACTAGGACTTGGGCTGAAC 12821 37 100.0 37 ..................................... TTTTATCCTTAACTTGCTTGATAGCGCGCTGTTTTAA 12747 37 100.0 36 ..................................... CAAGCTAAGCAGAAAGTAAGACTAACTTTTAGCCAA 12674 37 100.0 37 ..................................... ATTGGGCGATCGTCAAGAATGAGCTACAGGGTATTAG 12600 37 100.0 36 ..................................... TTATTTTATGGTGATTTTCTTCGTGTTTCTGTGTGG 12527 37 100.0 38 ..................................... AATGTTAAAGCTCCCTGATTTTTAGGGAGCTTTCTTTT 12452 37 100.0 35 ..................................... GTCCATAGTCCTGGTATTTCTAGTTGGCGATCGCC 12380 37 89.2 0 ....................C.A.........A...A | CT [12345] ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.4 36 CTTGAAACCTAACGAATCCCGGCAACGGGATTGAAAC # Left flank : TTACCTGATAATTTACGATTTACCAGATAATAAAGCAGCCAACAAGCGCCGCACTCGTCTACATAAAATGCTTTCTGGTTATGGAACTTGGACACAGTACAGCGTGTTTGAATGTTTTTTAACTGCGATAAAATTTACCCAAATGCAGATTAAGATCGAGAAGTTAATTAAACCAGACGAAGATTCGGTGCGGGTTTACGTACTTGATGCTGGTTCTGTAAAACGAACTATTACTTATGGTTCGGAAAAACCTCGACAAGAAGAAGTTATTATTCTATAGTGGTTATATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGATAACAGAATAGTTACAGCGTTTGAGAATAGAAAATAAATAGGAATTTATTTCAATAAGCGAGGCTGAAATGAACCTATTTTTGAGGTTTGCCAAAACTGGTGATGGAATCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : AACTCGGGTTTAAAACCCCGTCGTTTTAGGACGGCTTTGTATTAAGATTTAAACATGTCAGTACAAGACATTTAAATAAAACCTACCCCCGGACTGGGGGAAAGTCCACGCCCAAAACACTGTAAGGAGACACGCCAGGTGCTTCAAGCCGGGAAACCCGTCCAGCGCACTGGCTTATCAGTACGCCTTAACGGCAAACGTATTGAGCCTGGGAACCTGTGAAAACAGGATATTAAGACTGGAAGGTCTTAAGAATCTCCGTCTCTTTAGAGCGCAGAGAGTCAAAAAGATAGACAATCACTGAAGAGGTTTGATCGTGGTCACTAGTTTTAAACAACTAATTGATGAGCCTGAATTAAACAATGCTTTAGACTCAGAAGCAAAGTTTATCAGCAGTGATATAAGTTGGAATAACTACGAAGCATTACTATCCAAACTAGAGGATAATTGCCACTATCGCCTTACTTATCTGGATGGGGTATTAGAAATTGTGTCGCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 21577-21980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000089.1 Aetokthonos hydrillicola Thurmond2011 contig_167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 21577 37 100.0 38 ..................................... TTTCATGCTAGAAATCGGCGTATTTCTCTCTTGTTCTT 21652 37 100.0 39 ..................................... CCCGGAGTTTAATCAAAGAATTAGGGAGCTAAGATCTGT 21728 37 100.0 35 ..................................... TTTGAGGTAAAAATCATGGAAGACGCATACAAAAA 21800 37 100.0 33 ..................................... TTTAAATTCGCGGTTCCAGATTTGTTTATTGTC 21870 37 100.0 37 ..................................... ATTATGTAAATGAATTTGGCCATTTAGCAATGAGATC 21944 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTTTCAGTCCCGTTACCGGGATTCGTTAGGTTTCAAG # Left flank : AGTAACTATTAGTTTAGCATAACAAGTACCGAAGAACCAATATTTTTTAGTTTTTTTGATTGTCTCACGAGTGGTATCCAACTACGAGTTACACGACAACACGATGCATGTCCAGCTTTGTAAAAAGCTTGAACCCAAGCATTTATAAGCTATGCCACCCCTTTTATGCTCTTACAGCCCTGTTTATTTTTTCCTGCTGACTTACTTAAATAAATTTAGTATTCTTATTTACTATTTTTATAAAAATATTACGTATACCTTTATGCTACATTTTGAAGTGCGCAATGTGGGCTTTAAATTTTACTAACTAAAGGAGCGGCCAAAGGCGATCGCACGGCATGTTCGTCTAGAGTTAAGTTTTATTCCCATTTTTACTCCCTGCTCCCTTTTTTTTGTCAATATATCCACCTGGCTTATTTCGAGATTAAGCTGAATCAAAAACGAGACTGAGAAGGGGAATCAAGTTGTAACTGGCTCAGTAATATATGTGTCGGAATCGA # Right flank : GTCCACCCTCTAAAACCCTTACAGAGCAAGGATTCCATTACCAGTTTTGGCAAACCTCAAAAATAGGTTCATTTCAGCCTCTCTTATTGAGAGTAATTCCCATTTATTACCAACTTCCAAATGCTGTAACTATTTAATTGTCAAGGTTCTGGCGATTTTGGCAAACCCCCCCTAGTTTTAGCCCCCGCTTCGGTTTGCCAAACATCAAGCTAATACAACCACCATATAATAATTACTTCTTCTTGTCGAGGCTTTTCGAAACCATTAGTTGGGGTCACGTGTGTCGGGTTTGCTTCTGGTCGCTGTCGAGCGATCGCTGAAGTCTGATGATAGTCTTTAGGATGCTGCTTTGTCCTAATCGTACAACCATACGCCATTTTGGGGAACGAGTAAATCGTTGAACGATAATGTTTAATTAAAAATTTACTCAAAACAAACTCGTTCTGGTAGTAATTCCTCTCCGAGCTTGTGTAATTTCGGGTACAGTGATAAAGCTTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTACCGGGATTCGTTAGGTTTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 32416-31022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000005.1 Aetokthonos hydrillicola Thurmond2011 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 32415 36 100.0 35 .................................... CTTTATTTTTATGGCGTCTTTGTTTATGAATACCA 32344 36 100.0 38 .................................... TCTTTTTAACTATGCGAAGTTTTCTAATAACTTCACGT 32270 36 100.0 35 .................................... CTGCAACGAGACAAAGGAGCTTTTTAGTGAAGAAA 32199 36 100.0 36 .................................... CTCACCTGGTTGACCGATTGTTTGAGACGCTTGGGT 32127 36 100.0 36 .................................... CTGATCACAGATTGGCAAATTCACAAACCATCAGTG 32055 36 100.0 34 .................................... GTGCTCAAAAATCTTACAGACCGTTGATCGTAAA 31985 36 100.0 36 .................................... GATCCATCTCCTGAACAGTTTCCTTGTAAAATTTGA 31913 36 100.0 33 .................................... AGTACTTCTTGTAACACCCATGCTTCTTGTAGG 31844 36 100.0 30 .................................... TCTACCATCTTTCCAGTAGAATTCTACCTT 31778 36 100.0 38 .................................... GAGATGGTTTGTTTCCGGTCTTTACAGCTGCCGCTAAA 31704 36 100.0 35 .................................... TTGTAGGAGAAAATGAAGAAGGAACGTTTCTTCTT 31633 36 100.0 37 .................................... TTGTGCGCCATTTGGACCGTTTCCTACATTTCCGCCG 31560 36 100.0 35 .................................... TCTATCATTGCTGCTATTGTAAGAAAAAATAGTGG 31489 36 100.0 36 .................................... TTTGGGGCCTACAATTGTCTCGCTTTCAAATGTTAC 31417 36 100.0 37 .................................... TAACCGGCTTCCCAATGTTCTCGCAACGTTTTGTACG 31344 36 100.0 36 .................................... AATTAAAGTCGTCACACAATCTATCAGCAATGAATG 31272 36 100.0 36 .................................... AATTTGGTGCAAAAGTTTTATGGGTTTGCGCAAAAT 31200 36 100.0 34 .................................... CTTGAGTATCTACTGCGCCAGCTGAAAATCTACC 31130 36 100.0 37 .................................... TGTTCTTCGTGAACCGTATAATATTTATTATTATATT 31057 36 91.7 0 ...............C...............T..G. | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.6 36 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : ACAACGATAACTGACATCTTGCAACCCGGCTGAGTCAGCCCGACACCCCGCCCGGAACTTAAGTTCCGGGCTAATAGCTTAAGTCCATTGAAATGGACTAAAATCCTTGCGCAGTCCTCTTGAGAGGACTTTAGCTATCAGCGATTTAAATCGCTGGCTGGCTAGCTGACTAGATGAAGAAGTGTATATTGACTGTAGGGTGCGTTAGGTGAAGCCGTAACGCACCTTGAATTTTTGGCGGTTAATCATACTACAAGCCAAAGAATTATAATACTATTTATCTTTAATAGATAACCAAAAAAATTTTGTAACATGCTCATCGACACCACTCACCCAATCCCTGAAACCCTATATTTTTCGTTAACTGGTGTCGATTGCTTACTGGGCTTAGGTTTGAGGTATGTGTTTTGCTCAATTTTTTGCATGATGTACTATACTTTTAGCAGTGGTGTCGATTTGGGCTCTGAAACCCTTACCCTGTAAGGGCTGCTAGACGAACT # Right flank : AACAGTAATAATTAAAAGCCCCCATATCTGGAACTTAGAGCAGGGTTTTTTTTTTCAAAATTAAAAAGAGTAAGGACTATGTAAAATTTTGTAAAATCACTTAAAAGCTTTTTAGTTGCATGTTGATGCGCTAAAGCGCAACTACAAACTAAGGAGAGTTTTTTTGTACCGATCTACTGAAACGATGGACGGGCTATTTTACCAAAGTTTTTGGAAGCTATCTTCCTCAGATTTTCTACTTGCTTCATTCTCCAGAAAATCATCGCACTCTGGAGAATCATCAGGAAAGATAGTCAGTAACTCTATATCGTCTCCAAACTTCAACAAGCCATTTTCACTTAAATGTTGATACACATTAAATATCTATGAGGGCGAATGGCATTCGCCCCTACACACTGTATTTGTATCAGGATTTTCGGAAATGGTATGAGCGATCGCGCTTGGTAACGGTAGCGCTAAACCGCATCCCCAGCGCTTCAGGGATGGTCCTTCTTTGGGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 38762-38996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000005.1 Aetokthonos hydrillicola Thurmond2011 contig_20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 38762 24 100.0 45 ........................ ATAGTTGGAAACTTTTTGACATGGCCTACTACAGGGATTTTCCCT 38831 24 100.0 45 ........................ ATAGTTGGAAACTCTGCGTTGTTAAAGCCCGAACACGAGGCACCC 38900 24 100.0 49 ........................ ATAGTTGGAAACGGCTTCCGTTTTTGGGTTGTTGCTCTGCCCCTGATTT 38973 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 100.0 47 CCCTACCGATTGGGTTAAATCGGA # Left flank : TTTCTTATGTTAGTGGTTGTCGTGTATGATATTCCTGATGATAAAAGGCGTACTAAGTTATCCAACTTTCTAGAGGGTTACGGGCGAAGAGTACAGTATTCTGTGTTTGAATGTTTTCTAACTTTGGAGGAAATGCGGCAACTTTTTGAAAAGTCGAAAAAACTTGTTAAACTGTCCCAGGACAATTTGCGATTTTATTGGATTTCGGAAGAATCGGTTTCCAGAGTCTTAACTATTGGCGGTCAAAAACCAGCAGATCCACCAAAGCACTATATCATCTAGGTTTTAAGATATTTAAGGTGATTTTGTAACATGCTCATCGACACCACTCAGCCAATCTCCAAAACCCTATATTTTTCGTTAACTGGTGTCGATTGCTTACTGGGCTTAGGTTTGAGGTATGTGTTTTGCTCAATTTTTTGCATGATGTACTATACTTTTAGCAGTGGTGTCGATTTAGCCTCTGAAACCCTTACCCTGTAAGGGCTGCTAGACGAACT # Right flank : ATACGACAATAGATGTACTGGCAGATCACGGCGGTTAAAACCGCCCGTGTCGCCTTTCATCCCATGGGTAAATACGGCGAGCTTTCAGGCTCTCGCACTCTCTTAGTAAAATTTTCGATTACTGCCATCAAATTAGCGATCGCGAGCTACGGTGAGTGCCGATCACCTTATGCTGTTACGAGTTTTAGAAACCAGTTGTTCTGGTAGAACAAGTCGCTCATTTTGTTTCTGTTGCTGTTTCTCCATCATCATCTGGAACATAACTAAGCAAATCGCCAGGCTGACAATCCAGAAATTGACAAATTGCGTTTAGCCGTTCGGGTGACATTCGAGGCATAATATCTGTTTTTCGTAACCTGTAAACGGAAGTTTCGGTAATGCCGATACCTTCTGCCAAGTCTTTGTTCCTAACTCTTTTTTTAGCCATTATTTCATGAAGCTTCCAGGAAATCACTTTATTTGTCCATCATCAATTACTCCACGATCCTAATATTCGCAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1060-1683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000141.1 Aetokthonos hydrillicola Thurmond2011 contig_253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1060 37 100.0 36 ..................................... TGATATGAGTAATTATACTAAATATTATACAAAACT 1133 37 100.0 38 ..................................... TCATAGCTACATGCAGTGCATGAGATATACCATCCTTC 1208 37 100.0 36 ..................................... TATGTAGTAAACAATCCCGCCAATCAACTTACTGCC 1281 37 100.0 36 ..................................... CTCTATTGTTCTTTGCTTATCCTGTATTGAACTAGG 1354 37 100.0 36 ..................................... CTCTTCCTAGGTTAGGTAATGCACGCAAGTATTCAG 1427 37 100.0 37 ..................................... AATCCATTCCAACAACTTCCACCATGGGCTATACCTG 1501 37 100.0 37 ..................................... AAGCCGTTAGACGTTCGCTTTCTGCGGGGATGGGTGT 1575 37 100.0 35 ..................................... AGGTTAGGAGATTGGGTACATGCTATTTGTGTTCA 1647 37 91.9 0 .......T...........T..A.............. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 99.1 36 CTTGAAACCTAACGAATCCCGGTAACGGGATTGAAAC # Left flank : TACAACTTTATTCGTTGGTGGTTCGGGCTTTACGATTGTGTGACCAAAGGGCTGTACAATTAATATAGATGTGGATTGAAAGTAGATTCCCAAGGGAAGCTGCCTGAATAAAGTAAGCGCAGTTATTCGCGGACAGGTTTATGCGATCAGTTCCGAAAGGAACATCGCTGAGTCCGACGACTGTTCTTTGATTGCTCCAAGCTTAAGACTTAACTTTCCTATTGGTGTTGCTCGTGACTTTCTCCCAAAGTCTGGACATTGTTTAAGAATCCTTGTATCATCAAAGTATTAACTTGATGTTTGGCAAACCGAAGCGGGGTCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAACAGAATAGTTACACCGTTTGAGCGTTGGAGATAAATGATAATTACTCTCAATAAGAGAGGCTGAAATGAACCTATTTTTGAGGTTTGCCAAAACTGGTAATGGAGTCCTTACTCTGTAAGGGTTTCAGAGGGCGGA # Right flank : CAACTCATCAAATCCCTATTCCAGCAATACAACGCGATCGCTAAACATTGCCAAATGACATTGCCTAACTCAATAAGCATTAAGTCAGGCACCACAATTTGATCCACTGTTTCTAAAGCAGCGATCGCGCATGTCCTCTGCGTGTAATAGTGTATAGGCAAAGACCATCGTATCAACTACCATCAGGGTCTTCCTTCAGATTTCCAAGCTTGCACCTGACTTTCTGCTTCTATTGGCAACCCCAAAGCCCGTTGACGAATACGAGCAAGCACTTCATCTCGTTGTCCATAACGTTTAAGTAACAAATCGCGGACTTCTTGCTCCATCGAAATGCCTTTTTGTGCTGCCATGCGTTTAATTCGCTCGACTAACTCATCAGATATATTACGAATAGTAATTGTTGCGATAGTGCCTCAATGACTAGTGCTAATTTACTAGTGAATCTTTACCTTATGCTAGCACTTTGCTAGCGTTCGAGTCGCGCACCCATCAGTAAATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGAATCCCGGTAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 2612-3301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000141.1 Aetokthonos hydrillicola Thurmond2011 contig_253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2612 37 100.0 36 ..................................... TCGACGCTACAGTCACAGATAAAAGCCAAATCTTCT 2685 37 100.0 36 ..................................... CATCGTATATATTGGTTTATTTATTAGGGGGTTCTT 2758 37 100.0 36 ..................................... AGCTAGCTACAGCCTGTAGTAAGCTTGTAAACTCAA 2831 37 100.0 37 ..................................... CTAGAAGTTCCACTGCTAAACCCACATGGATACGCGC 2905 37 100.0 34 ..................................... CAAATTATCTTGACTACACTTCCAACTAATAGGA 2976 37 100.0 35 ..................................... CTGTGGGATGGTTTATGTTCAAACTCGTCTTCTGG 3048 37 100.0 35 ..................................... TTTCTTTTTCATGAGATACTTAGATAAAGCTTCAA 3120 37 100.0 36 ..................................... GTCCTAAAGCCCCTAGGGGCTAGTCCTGAGGTCACT 3193 37 100.0 35 ..................................... ATCGCATACAATCCCGAAAATCCATTACTTTTAAA 3265 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 CTTGAAACCTAACGATTCCCGGCAACGGGATTGAAAC # Left flank : ATTTACTAGTGAATCTTTACCTTATGCTAGCACTTTGCTAGCGTTCGAGTCGCGCACCCATCAGTAAATTGCGTATAAGGAAGGCTAGGTGAAAGCCCCTAAGAATGTGGCACGTTACAGTAACACATCCGCTTTACACAAATACACATTAAGATCAAGAAGTTAATTAAACCAGACGAAAATGCGGTGAGAATTTACGTACTCTATGCTGGTGCTGTGAAACAAACTATTACTTATGGTTCGGAAAAACCTCGACAAGAAGAAGTTATTATTCTATAATGGTTGTATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCAGGGGGGGTTTGCCAAAATCGCCAGAACCTTGACAAGTGAATAGTTACAGCGTTTGAGAGTTGGAGACAAATGATAATTACTCTCAATAAGAGAGCCTGAAATGAACATATTTTTGAGGTCTGCCAAAACTGGTTATGAAATCCTTGCTCTGTAAGGGTTTCAAAGAGCGGTC # Right flank : CATTAAAAGAGAATTAACATTTAGGTTTCTTGACAGAGTTGTTGAACCACTCGTAAGAACTCCTGGGTGAGAAAATCTGAACCAGTTGCACTATAGACTTGCTGCAACTGTTGGTAAAACCATAAAGTCCCCTCCTTACCAGCTTTAAACTCTTGCCAAATGCTACTACCATTTTGTCGGAAGTCTGCTAATAATGATCTTGCATTGTGCAGTTTATCCGCCAAAGACACCCTCCTGATTGAGGGTGAAGCATGACTTATATTTTCTAAATATCTTTTCTTACGTTCTAACCAAGGTGGTTTTGGGTTGGTGTCGTATTCAGTACACCCATCGACGATCGCAACAACCGTCTCACCGAAAAGCTGCCGAATTTCCTCACGAGTGGATTTTCCACCTTGATCTTCAACTCCATCGTGCAATAAACCTGCGATCGCCTCTTCTTCTGTTCCTCCAGCTTCCAGTACAAGTGCTGCGACACTCAGTAAATGGGATATATAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTAACGATTCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 5559-5297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000142.1 Aetokthonos hydrillicola Thurmond2011 contig_260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 5558 38 97.4 39 G..................................... TCCAATGGAATCTACGTCTGGCCTGGTAGTGAAAAATGC 5481 38 100.0 34 ...................................... TTTCGGTTTTACCGACTACTTCCAGATGGGCTAA 5409 38 100.0 37 ...................................... CTTTCTCTTCTGGATCATTATTATTAATGGTGAGAGA 5334 38 92.1 0 ..................................CG.T | ========== ====== ====== ====== ====================================== ======================================= ================== 4 38 97.4 37 AGTAAGAGTCCTTCTTTTCCCCGTAAGGGGACGGAAAC # Left flank : GATTTCTTGATACATATAGAATCGACTGTAAAATTATACTCCCATTACCTGTTGTTTCAAAGCTATTCGTGCAAATTTGACATAAGTCTTAATACAAGACGAGCATTTTGGTGAGGATTGCATTTCACCCGCTACTCCTCATGACCTGGGGGATTATTTATTTTTGTAAAGATGAGCCTAGGAGGATTACAAAGTATGTTTTGGCTGAAAATACCTCTATATCTGGCTTATATCGATTGTAACTAATTGTAAATTCTCTTGTAAAAATGTCGCAGTGAGCAAGAAAAAATACGAGGCAGTAAAGCAAAGCTTTTTAAAGAAAAACAAGATTTTTTAGTTTGACTCGTGGCTGTTTTCCTGTAATATAAGTAATGAAAGTCTTTTTTAGCGCTAAATGTTTTTGTCAATGTGTACTGTATCACAAAGCTACATCATGACTTCAGTATATCGGCGCAACTGCACCTTGAAAGCTAAATATAGTAATGGTTTCCAATGGGTAG # Right flank : CTGCGCAACGCTTACGCACTATGTACTTTCGGAGCGATCGCACTTTCGCTCAACTTCAAACAACTGGTAGTTATGCAGCTTCCATTTCCGGCTCGTCTAGAATTTCTGGGTTTCGCTTAATTGCTTCCCTACGGCAGGCTGCGGCGGTGTTGATTATGAGGAGTTGGGAAGAATGTGGCGTGGAGGATGATCCAAGGGCGGCTATTTTGGTGATGTTGGTGACGAACTGATCCCATAGAGTTAAGTTATCTTAAAATTTGCCGCCTGCGACGGGATCGTTCAATAGCCTCTAGCTTCTCTTCTAGGACATATTCTCTTAATCTTTCCCAACCCCATCTTGTAGCTGCACAAAAATTTACTTTTGTGCCTGTTCGTAGCAAAATATAATCTTCGTTGACATCGGCAATAATTTGGTTGCGAAAATCAGTTCCCCAGACTCTTCCTGCTTCTTCCCAAAAGACTTGACCAGGACTTTTAAAATTAGGATTGTCTAAATATTC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAGTCCTTCTTTTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [9,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 6249-6947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000142.1 Aetokthonos hydrillicola Thurmond2011 contig_260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6249 36 100.0 38 .................................... GATTTTTTGCTACCAATTGAGGCGTTTGAGCACTTTTT 6323 36 100.0 38 .................................... GAACTGTTAGTTACAGTCGTCTTTCTTTCTAGGAACGC 6397 36 100.0 37 .................................... ATATGGCGAGTGCCTACCCCAGTCACTACACAGTGAC 6470 36 100.0 37 .................................... AATAATATTTTTCTCAATTTCGTCAGCTTGTGCTGAC 6543 36 100.0 37 .................................... TGCATTGGTAACTGCCGTAGTAATGGATCTTGAAGAT 6616 36 100.0 37 .................................... GTTGCAATTATAAGGCAAAAACTTGACCCTCTAATAG 6689 36 100.0 36 .................................... AATAAGATGTGAACCAGGGTACAATGCTTCGCAACT 6761 36 100.0 38 .................................... ACAAACGAGAAGCTTTGACGCTGACACTGGTTTTTTGT 6835 36 100.0 40 .................................... TCTATATAAAAGACTGCGTAATTTTTTTTGTTACATTTAA 6911 36 88.9 0 .......................TGGG......... | T [6934] ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 98.9 38 CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Left flank : GCTTTGCTTTACTGCCTCGTATTTTTTCTTGCTCACTGCGACATTTTTACAAGAGAATTTACAATTAGTTACAATCGATATAAGCCAGATATAGAGGTATTTTCAGCCAAAACATACTTTGTAATCCTCCTAGGCTCATCTTTACAAAAATAAATAATCCCCCAGGTCATGAGGAGTAGCGGGTGAAATGCAATCCTCACCAAAATGCTCGTCTTGTATTAAGACTTATGTCAAATTTGCACGAATAGCTTTGAAACAACAGGTAATGGGAGTATAATTTTACAGTCGATTCTATATGTATCAAGAAATCGACACCACTCCTCCGAACCTTGAAAACCTCATAATCTCGTTAACTGGTGTCGATTGCTCTTGTAGCAAAGTTTCCAGGCTACAAGAGTCCTGTTTTGTTGAGAATAAACTCACCCTTATTGACAATTTAAAAAGTGGTGTCGATTTGGGGGTTTGAAACCCTTTCTGGGTAAGCGTTCTAGATGTGAACT # Right flank : CCGATGCTGGTAAAAATCAACGAAGCCAAGCAAGTCACTCGCTTCGCTCTCTTGTTCGCTATGGAGCACAGTTCGCTCCATGTCTGTGACTCCCGCGTATAAAGTTATATAAACCACATCAACACTGTGGAACTGCTGCCCCTGGAATCGTAGTTAAGGATGCCCAATCAATCGGAAAAGTAAGCCCTTGGCGACTTACAAGAAACTTGGAGGGACTACCAATAGTAGTGCGATCGCTCACCAAACACCCTTTAAGCGTCACAGTATACACCTTCGATTGCTGCGGATTACTGTAATTAGTCACAGTGTAAGTCCCCGGCGGAATACTGCTTATAATCAAACTATTCCCACTTTTCACTGCAACTGGCTGCGCTGTCTGTGATGAAATTGTAGTTGTCTGTTGTGTAGTAGCAGCTGTGTTTGAAGTGGTGGTTGTGCTTTGTGCAGTGCTGGAAGCGATCGCACTCTTCGGATCAAACCCCACAGGAAAATACAAAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 55476-56368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000023.1 Aetokthonos hydrillicola Thurmond2011 contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 55476 36 100.0 34 .................................... TTCCCTGAAAGTTCCATGGGAATAATAGTCGGGT 55546 36 100.0 38 .................................... CATAATCTTTCTGGATTAGAGAAAGACAGTCGTCTTAC 55620 36 100.0 34 .................................... AACAACCGCACCGCTGGGATTTTTCACCCATTGA 55690 36 100.0 33 .................................... ATAAAATCGCGTGGACAACACTTTTTGAAAGCG 55759 36 100.0 36 .................................... TCTGGTCTGCAATTGCACTGTTATGCAAAAAACCAA 55831 36 100.0 31 .................................... CTGATTTTTTCTTCTGTTCGTGCTTTTTTAT 55898 36 100.0 37 .................................... TAAAGGAGGTAAGTCCCGCCAGTTATCCCGGATAGAA 55971 36 100.0 35 .................................... GCTAGAAATCTGCGTTGGGTCATTCTTGAAGTGCC 56042 36 100.0 36 .................................... CTGTAAAGATCAGGATGAGGCCAGTTAGAACCACCA 56114 36 100.0 39 .................................... AACCTTTACTGACATTAGCACGAGCTAATGGTTCAGTTG 56189 36 100.0 37 .................................... AGTAATAAGAGCATTTGCGTTCTCCTTCACATGCATG 56262 36 100.0 35 .................................... GAGCACACCCATACGATTGAATTCAGGTAATTTAG 56333 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : ATAAACATGTTAGTGGTCGTTGTGTATGATATTCCTGATGATAAGAGACGTACGAAGTTATCCAATTTTCTAGAGGGTTACGGCCGAAGGGTGCAGTTTTCTGTGTTTGAATGTTTTTTAAGCTTGGAGGAAATGCGGCAACTTTTTGAAAAATCGAAGAAATTGGTGAAACCATCTGAGGATAATGTCCGCTTTTACTGGGTTTCACAAGAAGCTGTTTCTAGGGTCTTAACTATTGGTAGTGAAGAACCAACGACACCGCCAAAGTATTACGTGATCTAGATTTTAGAGATATTAAGGAGATTTTGTAACATGGTCATCGACACACTCCGCCAAATCGCTGAAACCCTATATTTTCCGTTGGAGTGTGTCGATTGCTTACAGGGTAAGGTTTTGAGGCTTGTCTGTTGCTCGATTTTCCACAACGTTTATAATGTTTTTCAGGATGGTGTCGATTTGTCGTCTGAAACCCTTGCTGTGTAAGGGCTCCTGGACGAACT # Right flank : CCAGCGAACTGCGACATGTTAGAGAAAAAATTATTTCCCCCGGTTCTTGCGTACTTAACGTGCTAAATTTTTAATTACAGTCGATAACTTTGTTTTAAAATCAAGGCTTACAGGCGCTTATAGCCAAAATTTTAATCATCAGACCTAAAAGGCAGTAAATAATGGCTGTCATCTTATCCCAGCAAGGATTTCAAGCTTATTTTTCAACATATTTAGCACGCTAAGTACGCAAGAACCATATGAAAGGAGTAAAAAGAACACGAAATATACCAGTTCTTTATGACGAAATCAAAAAACCTCGTGCCACCAGATTAACTGATACTGCATGGAAAGGGATTACCGAAACCGCAAAACAACAAGGTATTAGCGCTAGTGAATTAATGGAGAGATGGGGGCGTCAACTAATATTATTAGTCGAAAAGAGTGTTGACGGCGACTAAAGTCGCGTCGCCTTCCTCCCATGTCGCGCATAACAGACAAGGTTGTTCTAAATCTAGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 64785-66412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000023.1 Aetokthonos hydrillicola Thurmond2011 contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 64785 36 100.0 36 .................................... AGTTGCGATAGCTTTTGTTGCAAATGTTGAAGATAA 64857 36 100.0 32 .................................... ATGGCACAGGAAATTGCAATGCAAACCCGCAA 64925 36 100.0 37 .................................... TTTGGATATTTCATTATCCCTAAACCACAGCCCCCTC 64998 36 100.0 37 .................................... AAGTTGCCGAATGTAAGGCCGCAAGACGCAACCCAAC 65071 36 100.0 42 .................................... TTGACTGCGAATCCAACAGCAAAAGTGGGCGATTTGCAGAAT 65149 36 100.0 40 .................................... TTTTCAAACTAAACGACTGGGAACCTTTTGAGCAGTGGAA 65225 36 100.0 36 .................................... GGGTGGTGGCGCTTGGGGAAATTCTTCTGATAAATT 65297 36 100.0 34 .................................... TTTCCTCACCAAAGAGGAACTATCCGAATGCACC 65367 36 100.0 38 .................................... TCCGCTAATTTCTCCTGTCGAAAAACGACCATCATACA 65441 36 100.0 36 .................................... CTGGTGACCCAGTTCTGAACGCGGTTCAGGATGCAG 65513 36 100.0 35 .................................... TAGGGGAAAGTTTCTTTCCTGAATTTTCAACTTTT 65584 36 100.0 35 .................................... TTCCTGGGGATACCAATTCCTTGGCGAAACTTGGG 65655 36 100.0 36 .................................... CTTTTTTTTGGCAATAGCTGCCACCTGGGTATTAAT 65727 36 100.0 36 .................................... GAGTGATGGAAACGACAAAACTGAGAAGAAATAAAG 65799 36 100.0 36 .................................... AGAAAAAAATAAGACATCTCCCATGATGTCTTAGAA 65871 36 100.0 35 .................................... ATTATCCCCAAAAATTCATAGTGACCGAATATGAT 65942 36 100.0 37 .................................... TTAAGTGCAAGAATAGCCAATACAAGAGTGAATGAGA 66015 36 100.0 39 .................................... AAACCTGGTCGCCGGATCGTCTTGATTGATTTAGCAGTC 66090 36 100.0 37 .................................... TTTCCGAACAATGGAAATGGAGCGTGGGGGAATTATG 66163 36 100.0 36 .................................... CTTTAGGCCAGTACTGACTGACCACAGATTGCACTA 66235 36 100.0 38 .................................... TTAATCAAGCGCACATCAAGTCTATGGTAGCGTAATTT 66309 36 100.0 32 .................................... CTTGAATAATAGGGGCATTAACCTTGTTCCTG 66377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 100.0 36 GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Left flank : ACCTAAGCCGAGATCTCAGTCAAGCCCGTGATAGCTTCACCCCATGAGCTACCTCCTTGATACTTGCTTGATTTCCGAACTGATTGCCAAACAACCAAATCAACAAGTTTTAGATTGGCTAGATGCCCAAGTGCCAGAAACACTTTATCTAAGCGTCATCACAATTGGCGAAATCGCTAAAGGTATTAGCAAAATGACTGCATCTAACCGCAAAGAATCTCTAACAACTTGGTTAAATGAAACACTACCGCTACGCTTTGAAAACAGAATTTTAAGTATTGATTTCTCAACAATGGTGTTGTGGGGAAACTTAGTTGGGCAACTAGAATTTTCGGGGCGATCTCTACCCGCAATGGATTCTCTCATTGCAGCCATCGCACTTCATAACTCTCTATCACTTGTCACGCGTAACGAAAAAGATTTTGCCTCAACAGGGGTTGTAATCATTAATCCTTGGTCTTTTTAAGGATTTAGGGATATTCTTAACAATGACCAAAATG # Right flank : GAGTTCGTCTAGGAGCCCTTACTGTGTAAGGGTTTCAGACGACAAATCGACACACTCCTGAAAAACATTATACAACTTCCCAAAAATCAAGCAAGACATAGAGATCAAAACCTTACCCCATAAGCGATCGACACACTCCAACCAAAAATATAGGGTTTCAGCGATTTGGCGGAGTGTGTCGATGACCATGTTACAAAATTTCTGAATTCCCTTAAAATCTAAACCGTACAGGACTTATAATATCTGATCAAGTTATTGAACGATGATACTATTGCCTTATTCGTTGCAGCAGCTGCAATAATCTGGTTGTCTCTTCAACAGATGTTATGGCAATACAATCAGGTTACCAAGGAAACGTAGATTCATCTCTAGGTTTCTTCCTTAGTTTATAAAAAATGACTGATGGAAGGGTCCTCTTCCATGCATCTGCTAATCTATAAATTACTTTGACGAACCCACTGTGATTGCTCGCAATCACTAAAACAGTATGGTTAAAATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGATTTAACCCAGTCGGTAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 35057-34154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000019.1 Aetokthonos hydrillicola Thurmond2011 contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 35056 37 100.0 37 ..................................... ACGAACAGTAAGTGTAAGGAACAGCCAACGATAAGCC 34982 37 100.0 36 ..................................... CTTTGTAACCCTGACTCATCCTTATTTCCTTTAACC 34909 37 100.0 34 ..................................... AATTTCTGAGCGCGGTCTACAATTTCATCCAAAG 34838 37 100.0 35 ..................................... ATTTCCCTCCCATCCGTAAGATTGAGAGGAAGCCC 34766 37 100.0 34 ..................................... CGATAAAAAGTGATTGTAATCCCAGCGCTAAACC 34695 37 100.0 34 ..................................... TAGATGGTGCTAAGGGTAGATTAACTAATCATAC 34624 37 100.0 35 ..................................... TAAATTGTACTCATCAAATGAAGGAACATTAAAAC 34552 37 100.0 34 ..................................... CTTATCAGCCAAATCAACTATCCATTGATATAAG 34481 37 100.0 34 ..................................... AAGATCCGCATAAACTCTCTTAAGATCTAGAGTA 34410 37 100.0 35 ..................................... GCCATCATACCTTTTCTCTCTGCGCCAAAGTATAA 34338 37 100.0 36 ..................................... AGTTGATTTGTTGGACTCGAAGTTAATGAATTGACT 34265 37 100.0 38 ..................................... TCTGATTCCAAGTTGAATGATAAGACTCAAAAGGAAAC 34190 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Left flank : AGTGTTTTGGGCGTGGACTTTCCCCGAGTCCGGGGGTAGGTTTTATTTAAATGTCTTGTACTTACATGTTTAAATCTTAACACAAATCCGTCCTAAAAGGACGGGGTTTTAAACCCGAGTTTTTTGATAAAACGACAGTCAACAAAAAACAAATTATTCCCCGTGTTCCCTATTCCCTAAAAATTGTGAAGATAGACAACAATGAGCATAAAATATTAAAATAATGCTGATTCTTTCTTAAATCTGAGACCAGACCATTTTCTTGACTTACTGTGCGGGTAGGTAGGTGTTGGAAAAGGACTCGACAAAGAAATGGCTGAAATCTTTGTGGTACGCTGCTTCGAGTGCATTACTCACCTAAAACCACCCGCACCCTTTGTCTGGAGTAGGTTTCAGCCAAATTTCCCTCTTGTCAATCTCACTCTCTGATGTTATGATTACTTCATCCGCACTTTTGAACCTTGAAAACCTAATATTTACTACGTTTGAGTATCGCGCCC # Right flank : CGTTCAATCGAACGAGCATAGCACCGAGAGAGGCAAATAACGCATAATTTGACACTCTCCTACACCATAAACAGAATCAGAACAACAATTGCCAAAAACTAATACACTTCATATAACAGAAGCGTTAGAGTAATGTCCACTCAAGGGACGAGGTAGTCATAGCATCCACTCTAAAACAAGTCCGAAGCGATTATCCTTACCCTTTTTAGCATTTTGATGTTGAATATCTGTTGCTAACCTAAGATGGTGAGTAAGAGCATATCCCACCGCAAGTGTTGTTAAACCAACTTCTTCATCGCTACCAGGAGAAACCCAACTTTGAGTTAAAGAAATATCTGCTGCACCACCGCGAGACAAAACCAACAGCAGCCTCGCGCCTAAATTTACCCCATCTGTTGAGTAGCGGTTTGTTTGTAGATGTTGGTAACCAAGGACAGGTGCGATATTAATATAGCTACCTAAAGGACGCAAATAGTAACGTAAGTCAGCACCATAAGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCATCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 37976-36715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000019.1 Aetokthonos hydrillicola Thurmond2011 contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 37975 37 100.0 35 ..................................... GGTGTTGGTATATTGATTGGTGTACCATCCTTATA 37903 37 100.0 34 ..................................... TAACACGTCTTACTTTATCAACTTTGACAACTTC 37832 37 100.0 35 ..................................... CCATCCGAATGTAGGTGGTGACAAACATAAATAAC 37760 37 100.0 35 ..................................... TAAGCAGCCCTTCTTTTTTCTTACTGTCTATATTG 37688 37 100.0 35 ..................................... CAACAACAGCATCAGGAAGTATACCAGTAACACTA 37616 37 100.0 35 ..................................... CCAAACTATCGCGGGTACAGCAGGATCTATTGGAG 37544 37 100.0 34 ..................................... TTCTTAGAATCTTCTAAAAATACAGATCTAATAA 37473 37 100.0 35 ..................................... GTTGCAGCAATGGCAGGAATGAGTGCTGTAGCAGC 37401 37 100.0 35 ..................................... TTCCATTATTTAGCAACTTCAGATTTTATAAATTT 37329 37 100.0 34 ..................................... TTTAATTTTTGATTCTCTTTGCGAAGGGCTGACA 37258 37 100.0 39 ..................................... TTTTATGATCTGTGATTCCAGATCGGAAACCATATCATC 37182 37 100.0 38 ..................................... GCTGTCTCATAAACTAATGCTGATGTATGAGATTTTAA 37107 37 100.0 34 ..................................... TAGATATTTCTGTTTTGGGGGAGAGGTCTTCAGA 37036 37 100.0 34 ..................................... CAGAAAATCGTCTGGGTCTGCACCTTGATTAATT 36965 37 100.0 35 ..................................... AGAATATGTGTCTGGAAACTACCCCGAAACTATTA 36893 37 100.0 34 ..................................... ATATCTTCCTTGGGTGCGATCGCCTGTTCCTGTG 36822 37 100.0 34 ..................................... GGTAGAAGAGCATGTATAGTAATTATTGCCTGAC 36751 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 100.0 35 CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTGTATCCTACGATATTCCTGAAGATAAACGGCGCACGAAAATCCATAAAATCCTCAAATCCTATGGTCAGTGGGTACAATTTAGCGTGTTTGAATGTCAACTGACTGAAACTCAATACGCGAGACTGCGATCGCGTCTGAATAAGCTGATCAAACCTGATACAGATAGCATCCGATTTTATTTTCTATGTGCTTGCTGTTTTGGTAAAGTAGAACGTATCGGTGGTGAACAACCCCGCGACGATACTATTTTCTTCGCTTAGCGTGCGGGTGGGTAGGTGTTGGAAAAGAACTCGACAAAGAAATGGCTGAAATCTTTGTGTTACACTGCTTCGAGTGCATTACTCAACTAAAAACACCCGCACCGTTTGTCTGGAGAAGGTTTCAGCCATTTCACTCTGTTGTCAATCTCACCCTCTGATGTTATGATTAATTCACCCGCACTTTTGAACCTTGAAAACCTAATATTTACTACGTTTGAGCCTCGTGCC # Right flank : GTTAAATTTCTGCTTTGAGAATTCTCTCTAAACGCGCACTTTCATCTTTTGCCTCTTCAAGTAAAGCATTCCAATCGTCGGGAGGATGACCGCTCTCAAGCATTTTCTTAAAAACTCGATAAGCATCTGTGCTACTTTCATAGGCTCGCTTAGAACTTTCATCATTAACCCAAGCGTAAACAATGATTTTGCTGTCTTGATGATATCGAAAAAACAGTCGGTACTGCTGAAAAAATGTAGCTCTAAACCAGTGCTTATAATCGTCACCGAGCGTAGTGCCTTGGCGATAATCACTACGCGTTGGGTCTTGAGGAATAATATCAAATGCTAGTTTTACTATGGCAGCTAGACGCTTTGTGGCGTTTTTTTTCTTGTAGTCTTTGGGATACTTCTGACGCGAATACTCAACCTGTGCCAGAAGTTCATCGAGCTGGTTGAGAAAGAGAGGATGAGCAAATATATTCCAATCATTAATTACTAGCTGCTGATTCACAGGTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 53521-51545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALHA010000019.1 Aetokthonos hydrillicola Thurmond2011 contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 53520 37 100.0 34 ..................................... CTAATACCTTTCATAACATGAGGTACTGTTACTA 53449 37 100.0 35 ..................................... TCTTTAACGTACTCTATGTCAGTTATTTTACCACT 53377 37 100.0 36 ..................................... AATTGAGATAAATACTAGGAAGAAAAAATAAACGGA 53304 37 100.0 36 ..................................... CTTTAATGCGATCGCTTCCTCTGAACCAACCCCAGA 53231 37 100.0 34 ..................................... ATAGTGAATTGGTATCCTTTGGTGAATGATGCAG 53160 37 100.0 34 ..................................... TAGAAGATTATAAACTCACAAATATTTTAAACAA 53089 37 100.0 34 ..................................... CCTTTAAGGCTTTGGAATACGAAGCTAGCATTAA 53018 37 100.0 34 ..................................... TTTTACCGTTTGTAGAGGGTTCAGCAGATTTGAG 52947 37 100.0 34 ..................................... GTGATGCGATTAATTATTGCTTCAAATTTTTCAC 52876 37 100.0 36 ..................................... ATCATATAAGTAATGTTTCTCTGATGACTTATAACC 52803 37 100.0 39 ..................................... CCAGGTATATTTTCTTAGTCGTTGAGAAATCAGCCAACC 52727 37 100.0 33 ..................................... TTTTTCCTTCATCCCTAATTCTAATTATTTCGC 52657 37 100.0 34 ..................................... TAAAAAGAGGAGGCATCATCATTATGAGTCCGAG 52586 37 100.0 35 ..................................... ATCATGATGAATTCTCACTTATTTTGAGATATCAA 52514 37 100.0 34 ..................................... ATTAATTGACGAGTGTTTTTCATTTGCTGTAGAA 52443 37 100.0 34 ..................................... AATTAATAAGATATCAATTCTCTCAAACGGATCT 52372 37 100.0 35 ..................................... TAGCTATTCTAACAGGATAGTATGGCTTACCTAGT 52300 37 100.0 34 ..................................... GTTTACCTCTCAATTCTGTTTCACTAGTTGGATT 52229 37 100.0 39 ..................................... TTAGCGTGGTTATCCACTACCGAAAACTGACTTAAATAA 52153 37 100.0 34 ..................................... GCCATGCTTTATCTTGAACATGATTGTTTTTATC 52082 37 100.0 34 ..................................... CTCAGATATGGAAATAGAAGTAGCTGCAGCTTGG 52011 37 100.0 36 ..................................... GTCTTTAAATGATGATCGTGATTTAAATCCAATAGA 51938 37 100.0 33 ..................................... ATAAGCTCCTGTTTAACCTGGCGACAATAATTT 51868 37 100.0 36 ..................................... AAAAGTAAACAAAGATGAGGGGCGATCGCTTTCATC 51795 37 100.0 35 ..................................... GGCGCTTTCTCTTTTGTTACAGATGCTTTAATAAT 51723 37 100.0 34 ..................................... GCAAATCCGGTAAAAAATTGAACGGCATTATCAA 51652 37 100.0 34 ..................................... CCGATATTTCTCTGGTGTGAGCATCACCGCTTCC 51581 37 75.7 0 .........................CAAT.C..CTCA | ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 99.1 35 CTGGAAATTTCTCCTAATCCCTATTAGGGATTGAAAC # Left flank : ATTAAGTCTAATGATATAGTGATTGCTAGGGATTAAATACAGTGAACAGTAAACAGTTATCAGTGATCAATGTGTATGGTGTGGTCTTAACTGATAACTGATAACTATAATATTGGCTTGTAGTAGCTGTTTTCTTGAGAGGATCCCAATTTTGCAAAAAAATCGTAGTGGGAGCATCTTGCTCCCTGGTTTATTACTGAAACGGGCAAGATGCCCACACTACAATATAAAATAAATTTACATATTTGGGATGCTCCCTTTTTCTTTGCCTAGCGTGCGGGTGGGTAGGTGTTGGAAAACAACTTTACAACGTAATCTCTGAAATCTTTATGGGACATAGCTTTGCTGTCATCACCTATTCTAAACTACCCGTACCCCTTACCAGGATTGAATTCCAGCCATTTGCCCTCTTGTCACTCTCAAACTCTAATGCTATGATTACCTCATCCGCACTTTTGAACCTTGAAAACTTAATACCGATTGGATTTCAGACCTGCGCA # Right flank : GTTAAGGAAAATGGTAGGTTGGGTAGAGCGTCAGCGAAACCCAACAAACCCTTATAAATGTTGGGTTTCGTTCCTCAACCCAACCTACATTAAATTTAAGTTTTTGGCTTAATCGAGCAGTATTGAATTTCTATTAGGTATTGAAACTTCTAAATGAAAAGATCATGTAACGCATCAAATCTAATTGACTAACCAATCCAGCGATGAAAGTTTGGGACAACGCAGAAAAAAGATATGCATCTGATTTAAGATATTTCTTCATCGTCCAAAGAAATTGATAAGTTGGTAAAGTATTGACCGTAATATTTCGCTCGATTACCTGACGGAAACCTGTCTCAGCAGCAAGTTTAGCGTAGGATTTAGCCGTATATCGTACGTCCCATTGACCATAAAAGCTTTCGAGTTGCTTATTATCCCATAAAAATGGGATCAACCAATCTGTAGGAACAAAATCCGATAGAGCAAGATACCCATTTGGCTTAAGTACGCGAAAAGCTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGAAATTTCTCCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //