Array 1 1537978-1534348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044200.1 Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1537977 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 1537916 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 1537855 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 1537794 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 1537733 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 1537672 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 1537611 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 1537550 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 1537489 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 1537428 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 1537367 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 1537306 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 1537245 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 1537184 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 1537123 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 1537062 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 1537001 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 1536940 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1536879 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 1536818 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 1536757 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1536696 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 1536635 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 1536574 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 1536513 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 1536452 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 1536391 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 1536330 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 1536269 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 1536208 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 1536147 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 1536086 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 1536025 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 1535964 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 1535903 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 1535842 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 1535781 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1535720 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 1535659 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 1535598 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 1535537 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 1535476 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1535415 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 1535354 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 1535293 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 1535232 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 1535171 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 1535110 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 1535049 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 1534988 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 1534927 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 1534866 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 1534805 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 1534744 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 1534683 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 1534622 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 1534561 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 1534500 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 1534439 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 1534377 29 96.6 0 ............T................ | A [1534350] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1555772-1554524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044200.1 Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1555771 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 1555710 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 1555649 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 1555588 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 1555527 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 1555466 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 1555405 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 1555344 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 1555283 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 1555222 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 1555161 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 1555100 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 1555039 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 1554978 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 1554917 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 1554856 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 1554795 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 1554734 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 1554673 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 1554612 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1554551 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //