Array 1 19370-17601 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJED01000002.1 Rhodocyclus tenuis strain DSM 111 NODE_2_length_441925_cov_44.6875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19369 28 100.0 32 ............................ GACCACAAAGCCCGGTTCGCCCTCTTGCAGCC 19309 28 100.0 32 ............................ TCGACCTGGTATTACCCTTGGCTTTGGTACAA 19249 28 100.0 32 ............................ CGGCGAGGAAAATAAGCCATGACAGGCATGTC 19189 28 100.0 32 ............................ ACACGGTCGCACGTAGTGTTCTACTCGCACTT 19129 28 100.0 32 ............................ ATTACGAAACCGCACGTCAACCTTCGTTCTCG 19069 28 100.0 32 ............................ AGCAGCCCGCGCGCATTTTTAAAATAGCCGAT 19009 28 100.0 32 ............................ TTGCGGAAGGCAGCCCGCTCCGGCAGGCCGCC 18949 28 100.0 32 ............................ TTGCCGAAGTCGAGAATGCCGCGAACGAGGCC 18889 28 100.0 32 ............................ CGGTCGGTGTGCCGCGCGAGGGCGGCGTGCAC 18829 28 100.0 32 ............................ GAATGGATCGAAGCCGCCTTAACGCACCCGGC 18769 28 100.0 32 ............................ CGTAACCCGCTGCGTTGTGGAGCCTCTTGAGA 18709 28 100.0 32 ............................ TCGCGGGCAGCAGCGCAGCCTTGACCGCTGAT 18649 28 100.0 32 ............................ ACTCCGGCCAGCCGGCGCCGAGTTGCGCCAAC 18589 28 100.0 32 ............................ GGGATGCGGGCGTCCGCGAGCGTGAGCGCGTT 18529 28 100.0 32 ............................ ACATGCGGTTGCCGAGTGTTACGAAATAACTC 18469 28 100.0 32 ............................ GTCAACTCGGCGAGCGCCGAGGTTGCGGCGTC 18409 28 100.0 32 ............................ TTCTCGCGCGCCCATCGGGCGCTACCGTACTC 18349 28 100.0 32 ............................ TTCGCGTAAAGTGGGGCGGCGCCCTGATCTGA 18289 28 100.0 32 ............................ TTGGCGGGGCGTCAGTCGGGCGATGTCGCGCC 18229 28 100.0 32 ............................ TCCGGCAATCCACGCCCCCAAGGGGGCAAAAG 18169 28 100.0 32 ............................ GAATTGCGGACGAAAAAAAACGCCTTCTTTCG 18109 28 100.0 32 ............................ TTGAAGCCACGCACCTCAAAACCTTTCGTCGT 18049 28 100.0 32 ............................ ACAAACCCCGGCGATAGGTGGCTGTAGCGCTC 17989 28 100.0 33 ............................ CTGGTCTGCGGGGATGCCGGCTTCGGTTCCGTA 17928 28 100.0 32 ............................ GAGCTGCGGCGGATGCACGCTGCAGGCGCGTC 17868 28 100.0 32 ............................ AACGGGTGGCGTCGCGCCGCACATCGCCCGCT 17808 28 100.0 32 ............................ TTTGGCACGATCCACCACAAGCCGGATTCCTC 17748 28 100.0 32 ............................ ACTTGAAAACAGCGGCGGCGACGAGCACGACC 17688 28 100.0 32 ............................ TGCGGGGCTGCGGCCTCCGGTTTCTCCCTTGC 17628 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTTGCCGCCGTGCAGGCGGTTTAGAAG # Left flank : ATGGGCACGCGCCCTCTACGCCAGCCTCTCGGCCGGCCACGGCCTCAACTTCACCCGCCAGGAGGGCGTCGGCGCCAAGGGCAGCAAGGAAGAACGGGTGAATTCCTTCCTCGATCACGGCAATTACATCGCCTACGGCCTCGCCGCCGTCGCCCTCAACGGTCTCGGCATCAGCTTCGCCTTCCCCCTGCTGCATGGCAAGACCCGGCGTGGCGCACTGGTCTTCGACATCGCCGACCTGATCAAGGACGCCTATGTGATGCCGCTGGCCTTTACCTGCGGCGCCGACCCCCGCGTCAAGGACAACACCTACCGCGCCCTGCTCATCGAGACCCTCCAGGACGCCGACGCTCTCGATTTCCTGTTTGGCTTCGTCAAACAGCTCTGCGAAAAAACACTTTAATATCATAACGTTAAGAGCTCCCTTGAACAACGAAGTCCAAAGCACGATTTTTGGGGCAACACGCTGTTTACAAAGTTGTTTTTAGACTATTTATACA # Right flank : ATTATGAACAGGGTGCCGCTAAGGACGCTTGTTTTGTCACCATGCTGGGGTTAGGAAAGCTTCCGACCATATTGTTGCTGTGCGTTGCACACATAGAATCATTCCGCTCAAACTACTACCCGGCTTCATTAATCCATCTCTGCACCCTGACCTCTAACTCAAAGGCGCGACTTATATGACGGACAAAAAACCCGGCTTCAGTTCGATTTTGCAGATTCTGAAAAAAGACCCCTGGAAGCGGCGAGCGCAGGAGTTGCGTGCCGCCCTGCCGGACATCGAGGCACAGCTACGTGACGCCAGATCCGACACTGAAAGAAGCCTGCTCACGGCGCTGCTGGAGCTAAAGCAACAACAGATCGGGGCGGCGGCGCGGCAAAGCCACAGCGAGTGGAATCGCTGCAGCGCAGAAGCCGCCACGCTGGAAGAGAAGATCAACGCAGCGCGCGCCGAGCGCGTGGCCTCCTGAGGCGCTAAGGGCAGAACGCGAACACCCGGCGCTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCGCCGTGCAGGCGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 112037-109979 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJED01000003.1 Rhodocyclus tenuis strain DSM 111 NODE_3_length_381550_cov_44.1361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 112036 37 100.0 35 ..................................... CAAGAAAGTCGAGCCTTTCCCGTTGCCGAAAAAAC 111964 37 100.0 35 ..................................... GGTGTCTGTGCCGCCGGCGCGACGGGCGCGGCGAA 111892 37 100.0 36 ..................................... CCCCCCATGCCCGCCTTGACCTCACCCCCCTCGCCG 111819 37 100.0 36 ..................................... AGCGACGGGCACGTAGGCAGCGGCCAGTTGGGACAG 111746 37 100.0 34 ..................................... GAGCTTTTGCGTCCAGTACGCGGACTCTTCTGCG 111675 37 100.0 35 ..................................... GGCGTCGTGCCGAGCAGCTTGGTCGCGGGGATATT 111603 37 100.0 34 ..................................... CCGTTGCTTCGATCGTGAATCGCTCGGAGTTCTC 111532 37 100.0 35 ..................................... CTCGCCGGCCACGGTGACGAGGCCGAAACGGTCGC 111460 37 100.0 36 ..................................... CGGCCTGCGCCTGCTGGTGCTCGACCGCTTTGATGT 111387 37 100.0 35 ..................................... GGGGCTTGTAATGATGCCCATGACCGACGCGCTGG 111315 37 100.0 35 ..................................... GTCATCAGGGTGACAACCCTGACCCGCACAGCCTT 111243 37 100.0 35 ..................................... ACTTTGCCCTTCATACCGCCCTTCACGCCCTTCAC 111171 37 100.0 35 ..................................... AATTCAACGATGCGCGAGCGGGGCGGCGACTCTTG 111099 37 100.0 35 ..................................... CCACAAATCCGCAAAGCTCGCCCGGCTACCGAAGG 111027 37 100.0 34 ..................................... CGATTCGCTGCTGGCGGCTTTAGCGGGTTTGTCG 110956 37 100.0 38 ..................................... GCGTAATACAGGCCCCGGCTCATCACGACATCGATCGC 110881 37 100.0 36 ..................................... ATCGGCAATGGCGTGGCGAATCGCCAGTGGGCGGTT 110808 37 100.0 34 ..................................... ACGCCCGGCTGATCGGCCTCCGGCAGCAGCGGCT 110737 37 100.0 34 ..................................... CGATTGAGCAGACGCGGTGCGCGATGGCTAAGGC 110666 37 100.0 35 ..................................... ATAGAGGGAAAGAGAATGGTCCGTTCCCCATGGTC 110594 37 100.0 35 ..................................... AAGCTTTTGCCCGAGGCCGCCGCGCTCGCCGTTCC 110522 37 100.0 36 ..................................... GAACTCTTCGTAATAGAGCATCGCCATAACATCCTC 110449 37 100.0 36 ..................................... GGGGCAGGGAATACTGTTACGCCAACCTCGGATTCA 110376 37 100.0 35 ..................................... GCACGCTGTCGCGCAATTTCACTTCCGCCAAATCC 110304 37 100.0 35 ..................................... AGATAGCCGCCGACGACAGCGCGAGAGGCGTCAAA 110232 37 100.0 35 ..................................... TTGTGGGAATGGTCGTTGCTGCTCGCCAAGGGCGT 110160 37 100.0 34 ..................................... CTGATGGCCGATCTGACTGACGTTGGAAACGCAC 110089 37 100.0 37 ..................................... GGTTTCTTGCGCCTGAGCGCGGTCGATGTCATCCACG 110015 37 70.3 0 .............C...ACAA....A.C.CG....TG | ========== ====== ====== ====== ===================================== ====================================== ================== 29 37 99.0 35 GCATCGCCTCCCGGCAACGGGAGGCGTGGATTGAAAC # Left flank : ATACCTGCCTTTTCTGGTGCGCTGAGCATGCTGGTCATCGTCTGCTACGACGTCAATACCGAAACCCGCGAGGGGCGTCGGCGCCTGCGACGCGTTGCCAAGCTCTGCGAAAGCGTTGGCCAGCGGGTGCAGAAGTCGGTCTTTGAATGCCAGGTCGACCGCGCCCGCTTTGAAGCGCTGGAACGCGATCTGGTCGCGGAAATCAAGGACGGGGAAGACAACCTGCGCTTCTACCGCATCGCCGAGCTGAAAGGCTACGAAGTTCGCGAACACGGCTGTTTCCGCGCCACCGACTTCGACGCCCCGCTCGTGCTGTGACTTTGCGCGAACCCCCAGTGACCATGCTTTTGCCGGGCGATCCGCGCAACGCGCATGCGCATGATTTAACGCATCTTTCCGCCGGTGATGACCGTCGCGTAAGATGCTTTCTGCTCAGGAACGAAGCGGTCCGCGCAATACGGACGTTTTGTTCTTACGCTTCCGGTAGTTGCGGGGCATGA # Right flank : CCATTAGCGGAATCTGAACGGGGCGAGTAGCTGCTGCTGGGGCCTGTATCTCGCTACAGCGAATGGCGTGCGAGTAGTTCAGCAAACAGGGAGGATGCGCAGTGCTTAGATGTGAGGCATTCCTCTCATCTTTTGATACGAGATCAAGAACAGTTCATTTCTATCGAATGATCTCTTTACTGCCGTCAGTCGGGTGTTCTGCGCTAGGAAGGGCAAGTGGCATTCACACCACGTTATTTTATGCGTGAGTGTCACGTTGAGTGACACTTACTACGACTACGGCAGAAATGCAAAGAGGCCAATCCGAAGATTGGCCTCTTTTCGATTTCTTTGGTCGGGGCGGCGGGATTCGAACTCGCGACCCCTTGCACCCCATGCAAGTGCGCTACCAGGCTGCGCTACGCCCCGACTGGCCGGCATTATATCCGAAAACGCCGGCTGCGCTTCATTTGTCGTGCGGAAACTATTCGCCAGTTTCGCGTCGGAGGAGCGCAGCGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCTCCCGGCAACGGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //