Array 1 20930-18312 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPF01000041.1 Pseudomonas aeruginosa strain LIM1595 NODE_43_length_36715_cov_20.912598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 20929 30 100.0 39 .............................. ACTTTATTGCCAGGGCGAGACGACAGCGAGCGGGCTGGT 20860 30 100.0 37 .............................. ACCGTCGAGTTGCGTGATGGCAACAGCGTGACGGGGT 20793 30 100.0 36 .............................. TCTTCGCATCTGGCGATCCGCGCGGCGAACCGAAGT 20727 30 100.0 37 .............................. TGGTCTGGTGGATTCCTGGCACGAAGGTGTGCTGGGT 20660 30 100.0 37 .............................. GCTTCTGACGTAGCGAGTTGCTGACTGGCGCGTGAGT 20593 30 100.0 36 .............................. TTCGCGGGCTCGCCCATCTTCGGCTCCTGAGGCTGT 20527 30 100.0 37 .............................. CGCCAGTTTCCAAGTTGAAGCGTTGTCGGTGTACGGT 20460 30 100.0 35 .............................. TTGGCCGGCTCGCCGAAGGCCTTGCCGTCGTTCGT 20395 30 100.0 35 .............................. ACGATCTCGCAGCAGTAAGCCAGTGCCGGGGTCGT 20330 30 100.0 36 .............................. TGAAACGCGCAAACCGCTACGTCGGGGTCCACAAGT 20264 30 100.0 37 .............................. TCATGCTGCAATTCTCCTGCGCATGTCAGCCTCAAGT 20197 30 100.0 37 .............................. AGCAGGCACGTACCGCAGGCTCTCGAAATGTTAATGT 20130 30 100.0 37 .............................. GACAAGCCACCTACCCACTCCTACAACCCTTTCGCGT 20063 30 100.0 35 .............................. ATGGTCCTTGCCCTGCTTCGGCGAAGGCTCCTTGT 19998 30 100.0 36 .............................. CCTGAACCGTTGCTGATCGAGGCCGATGGCCCAGGT 19932 30 100.0 37 .............................. ACCACGCAGACGCTGGACGGTCTCACCTCCGCTGTGT 19865 30 100.0 37 .............................. ACCGCCACACTGGAGTTGCGTGAGCGACCCATCATGT 19798 30 100.0 38 .............................. GCTGCCTGGCAGGCCTGCTTGAAGCCGGCCGAAAGCGT 19730 30 100.0 38 .............................. ATCGCCGCAGACGCTACGCAGGCAGAGACCACTGCCGT 19662 30 100.0 36 .............................. AGGCCGAAGCGCCGTGACTTGAAGACCTTGCCGAGT 19596 30 100.0 36 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGGT 19530 30 100.0 36 .............................. TGGGGCGAGCTGCGCGGCAATCCGGCCGACCCCAGT 19464 30 100.0 35 .............................. TCGATCCGTCCTACGCGCTCGCCTACGCGGTTGGT 19399 30 100.0 36 .............................. AACTATGAGGTCGTCGAGGTCAAGACGGTGACCGGT 19333 30 100.0 39 .............................. CGGACGCCCTTCGGGCCGAGGAGGATCACCTTGAACCGT 19264 30 100.0 37 .............................. TTGCGCGGCTGGCCGCCGGCGGCCTGGCTGTGGTGGT 19197 30 100.0 35 .............................. ATCTGCCACCGCGCCGAACTGGTGCTGCAGACCGT 19132 30 100.0 36 .............................. GCGTGCTGCGCGAAACCCCGAAAGCGCACATCGTGT 19066 30 100.0 36 .............................. TATCGCCAGTGAAAACCAGTTTCCACACTGTTCCGT 19000 30 100.0 37 .............................. AGCGCGAAATCCCCGTTGGGAGAGAGTTTCACCCTGT 18933 30 100.0 36 .............................. TTTTGCTCGGCTACGACTGTTCGCTCGAGCACGGGT 18867 30 100.0 36 .............................. CAAGTCAGGCCGAAGAAAGAGACGATATAGCTGGGT 18801 30 100.0 36 .............................. ACCTCGCCGGTGCGCAGATCGAAAACGCCGGTAGGT 18735 30 100.0 36 .............................. GATCCGTTCTTCATGGCGGTCGTCAAGGAGATAGGT 18669 30 100.0 35 .............................. AGCGGCTCATGGCTCCTGCTGTTGCGGAACCCTGT 18604 30 100.0 36 .............................. CTTCTTGAGATTGTCGAAGACGAATCCCCACTTGGT 18538 30 100.0 36 .............................. GGCTACACGTTCTTCGCACCCTCGTTAGAGGAAGGT 18472 30 100.0 36 .............................. GGTAGGTTTCATAACTGAAAATCTAGAAAACCGTGT 18406 30 96.7 35 ...............T.............. ACGGTCGCGCTGGCGGGATGCGCCGGCCAGGTGGT 18341 30 93.3 0 .......................G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.8 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAATTCTCTAGCTGATTGATTTATAAACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAGAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTGGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGGAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGGCTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACTGTTGGTCCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //