Array 1 943770-940321 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBX01000001.1 Brachybacterium squillarum M-6-3 50.WUPEI.1.00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 943769 27 100.0 33 ........................... GTGGCGGCGCGCGCTCGCCGTGGCCGGCGTCCT 943709 27 100.0 33 ........................... CCTGGAGGACGACTCCGACTACGACTCGGACGG 943649 27 100.0 33 ........................... GATGCGGGCCATGTGCTCCGGGGGCCATGCGTC 943589 27 100.0 33 ........................... CGCGGGCACCTCGGAGACGCGCGACGTCCGCGC 943529 27 100.0 33 ........................... CCGTGCTCGCACTCAACGACACCACCGACCGTC 943469 27 100.0 33 ........................... CGAAGAAGCGCCCCCGCCATGCCGGGCGGGGGC 943409 27 100.0 33 ........................... CCGGTCCTTGTTCCGGCCGATCTGAGCGGCCCG 943349 27 100.0 33 ........................... CACGACGCCGCCGTACTCCTCGCGGTTGATCGG 943289 27 100.0 33 ........................... CGACACGACGACGCGATGGTCGCCGGCTTCGTT 943229 27 100.0 33 ........................... GGGCCGCCAGTTCAGGAGGGCGGTCGGGTTCGC 943169 27 100.0 33 ........................... CTTCCCCGCCTCGATCCGGTTGGTGACGTACAG 943109 27 100.0 33 ........................... TCAGGAGTGGGCTCTCGCCTACGATGGCATGGT 943049 27 100.0 33 ........................... CGTGGTCTCGTAGTCCTCGCCCTCACCGAACAG 942989 27 100.0 33 ........................... CGACACGGACACCGGCAGGTCCACCGAGGCGCT 942929 27 100.0 33 ........................... CATCGGCAACGTGTGGTGGGGGCTCGGCCTGAA 942869 27 100.0 33 ........................... CCCAGCGGGCTTCTCCGCCGGGTACATGGACAC 942809 27 100.0 33 ........................... CACGGTCATCACCCCCGAGGTCGGCCTGAAGTT 942749 27 100.0 33 ........................... GGCGAGCGCGGCGTTGGCCTCGACGGTGACCTT 942689 27 100.0 33 ........................... GTTCCTGGAGCGGGCCGTCGCGTCGGAGGTCGA 942629 27 100.0 33 ........................... CCCCGCGGAGGCGTACGCGAACGGGTGGATGGT 942569 27 100.0 33 ........................... CAGCCGGGACATCTGGTCGCCTGGGAGTACTGC 942509 27 100.0 33 ........................... CGAAGCGGCCGGTGATAATGCCGAAGCCGAGGT 942449 27 100.0 33 ........................... TGGGGCTACGCGATCCAGGACAACGCCGAATGG 942389 27 100.0 33 ........................... CGTGCCATCGGGGCCGCGCAGGTAGTCCACGGC 942329 27 100.0 33 ........................... CACCAAAAAGATATCCACCTCCACCCGTGCGGA 942269 27 96.3 33 .....................A..... CCTGTCTGGGGCCTGCACCCCTGGATCGGGGGC 942209 27 100.0 33 ........................... TGATTGGTGGAGAATAGTTGATGCTTTGTCTAA 942149 27 100.0 33 ........................... CATTACGCCGTGAACAACGCATACCTGCCGGGC 942089 27 100.0 33 ........................... CCCGGCGTCCGTCGCGTTGTCCGGCGTCACGTC 942029 27 100.0 33 ........................... CACGTCCTGGGGCGTCGGCGTCTCGGATGTGGA 941969 27 100.0 33 ........................... GTACGGGTAGCGTGCCCCGCCGTCCCCGGTGGG 941909 27 100.0 33 ........................... CGTGCCATCGGGGCCGCGCAGGTAGTCCACGGC 941849 27 100.0 33 ........................... CTGTCGAGCGCCAGATACCCGGTGAGCGTCCCA 941789 27 100.0 33 ........................... CCAGGTCAGCACGGGCTGGATCACCCGCGTCTG 941729 27 100.0 33 ........................... GGGCCACGTATCCGCGCTCCGGTAGGAGTCACG 941669 27 100.0 33 ........................... CAGGCCGATGGCCTGGGCGATCGCGGCGAGGGT 941609 27 100.0 33 ........................... CGCGTCCAGGCGAAGAACGAGAAGCGGCCCCCG 941549 27 100.0 33 ........................... CATTGCGGCTGTTGGCTGCCTCTCCTGAGCCTT 941489 27 100.0 33 ........................... GACCTCGGAGGGCCGCCAGGCACGGTGCGGCCC 941429 27 100.0 33 ........................... GACTCACCCCGAGAACCCGAAGGAGAACTGACC 941369 27 100.0 33 ........................... GTCCCGCGGGCAGGCCACGGTGCTCGGCGTGCT 941309 27 100.0 33 ........................... GTCGCTGCGGCTGACCTCCGTGGGCCAGGCCCG 941249 27 100.0 33 ........................... CACGTCCCATCCGTTCTGCTCCGCGGCCGCGCG 941189 27 96.3 33 ...A....................... TGGTGACACCCCCCTGCACCCGGGGTGGGGTGA 941129 27 100.0 33 ........................... CGCGCCCAAGTCGTACTCCCTCGCGGCGGTGCT 941069 27 100.0 33 ........................... GTATCGGCGCACCATAAACGGTCGATCGACGCA 941009 27 100.0 33 ........................... CACGGACCCGTCCTCGCCGTTTTCGTTCGACCG 940949 27 100.0 33 ........................... CCATGGGAAGAGTGCGCACTCGCGTGACCTCAC 940889 27 100.0 33 ........................... GCCACGGCATCATCGGTGCCGTGAAGGTCACGT 940829 27 100.0 33 ........................... TTCACGGTCGTATCCCGGGCACCCTTAAACGTC 940769 27 100.0 34 ........................... CCATCCGGTACTAACGTCGGAAGGCTGGGTCCCG 940708 27 100.0 33 ........................... CGCGCAGAAGGTCGCGGTGAAGCTCGCCGCGGC 940648 27 100.0 35 ........................... GATGGTGCCCTCCTCGAGGGCGGCGCCTCCGCCTC 940586 27 100.0 33 ........................... CTCGGTGCTCCACGATTCGCCGGTGGCGGGGTC 940526 27 96.3 33 .......................T... CCGCTCGGCGTCCGAGCGGGTGCCGTCCAGGCC 940466 27 96.3 33 ...................A....... CGACACGAAGGAGTCGGTGCTGTAGACGATCCA 940406 26 85.2 33 ...T....-.....A......A..... GACCGCCGCCCAGAAGAAGGAAGCACGGCAGGG 940347 27 85.2 0 ............T...A........AG | ========== ====== ====== ====== =========================== =================================== ================== 58 27 99.2 33 GTGCTCCCCGCGCAGCGGGGATGAGCC # Left flank : GTGACCTGCAGGCGGTGCCCTCGGGGGCGAACTGGGACGAGGAGCAGTTCCTGGCATGATGACCCTGGTCCTGACCGCCTGCCCGGCAGGTCTGCGCGGAGACCTCACGAAGTGGCTGATGGAGATCAGTCCCGGTGTCTTCGTGGGCAGGCCCTCCGCCCGGGTCCGGGACGACCTCTGGGCGCGGACTGTCGAGCTGTGCAAGGACGGCAGGGCCCTGCTCGTGTACTCCGCGGACAACGAGCAGGGGCTCGTCTATCGCGTCCACCGCCACGAATGGGAACCCGTGGACTCCGATGGCGTGACGCTTATGCTTCGACCCTCGGAAGCCCCTCCCCCGCAGCGCCGCACAGGGTGGAGCAATGCCCGAGCCATGCAGAGGTCCCGTCGCCGTCGTTGAAAATTCCGGTGCTGCTCCCAGCACACGGTGACTCATGAGAGCATCACCAAACCTGCATCCAAACTGGCAGAGCTCGCTCCGAATGCCCTGCTCAGCAAGG # Right flank : CCCCCGGCGATCAACAGCGTACGCTCGCCGTCCTCGTGGAAAAGGTGAAGGGCGAGGATGTCGTTGTGATCGATTGTCCACGTTGCGCGCTCCGAGCGACACCGGAGAGCTGACCGCCGAGCACGCGAGGAGGGAAGATGGTCGAGCAGTCATCGCTATTGCGCGGTGATGGACAGCAGAGCCGCGATGCGACTCTCCGGGGCACCGAGACGGGCGCAGACTGATACTTGCGTTCTGCAGTGTGAGTCTGCGCGCACCGGGACAGCGACACTCTGACAGTCTTGACGGCTGAGGCGGCCGACGAGACCACGCTCAGGCCCTCTACATGCCTGCGAGCTGCCCCTATCCACACATGCGCACAGTTGCACATATGCGCAAACACTCTGTAAGTTTCCGGTATGGAGTTGACAGCCTCCCGCGTACTCGCCGTCCTCGATGAACTGCGCGTGCACGGAGGCGATCGCACGGACGTCGAGGTCAAGCGTGCCGCGGGCGGCCTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //