Array 1 23922-22367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLYE01000003.1 Escherichia coli strain MOD1-EC6417 MOD1-EC6417_3_length_38868_cov_130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23921 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 23860 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 23799 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 23738 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 23676 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 23615 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 23554 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 23493 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 23432 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 23371 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 23310 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 23249 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 23188 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 23127 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 23066 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 23005 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 22944 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 22883 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 22822 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 22761 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 22700 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 22639 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 22578 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 22517 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 22456 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 22395 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12942-14556 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLYE01000054.1 Escherichia coli strain MOD1-EC6417 MOD1-EC6417_54_length_15234_cov_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12942 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 13003 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 13064 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 13125 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 13186 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 13247 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 13308 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 13369 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 13430 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 13491 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 13552 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 13613 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 13674 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 13735 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 13796 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 13857 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 13918 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 13979 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 14040 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 14101 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 14162 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 14223 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 14284 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 14345 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 14406 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 14467 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 14528 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //