Array 1 318-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUJ01000335.1 Acinetobacter baumannii strain Pesh-29 Pa17T_S9_L001_R1_001_trimmed_contig_337_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 317 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 257 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 197 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 137 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 77 30 93.3 0 ............................CA | ========== ====== ====== ====== ============================== ============================== ================== 5 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : ATACGCCATTTAGAAAATAGCACGAGCAAGTTCTTGAGATGCCAAAA # Right flank : AACTAAAAGCTATTTATGGGGGTAAAAATTTGTTCATGGCGGCATACG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48-618 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUJ01000116.1 Acinetobacter baumannii strain Pesh-29 Pa17T_S9_L001_R1_001_trimmed_contig_116_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 48 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 109 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 169 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 229 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 289 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 349 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 409 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 469 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 529 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 589 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 10 30 89.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TACGCCATTTAGAAATGTCATTGGCCGGCCATTCACAACCCCGATAAG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33331-34620 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUJ01000079.1 Acinetobacter baumannii strain Pesh-29 Pa17T_S9_L001_R1_001_trimmed_contig_79_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 33331 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 33391 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 33451 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 33511 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 33571 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 33631 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 33691 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 33751 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 33811 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 33871 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 33931 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 33991 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 34051 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 34111 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 34171 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 34231 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 34291 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 34351 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 34411 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 34471 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 34531 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 34591 30 93.3 0 ............................AG | ========== ====== ====== ====== ============================== ============================== ================== 22 30 96.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : CATCAAGTAGATCAGCAGTTACCTGTTCAGGTTCATGGCGGCATACG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-739 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUJ01000090.1 Acinetobacter baumannii strain Pesh-29 Pa17T_S9_L001_R1_001_trimmed_contig_90_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 50 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 110 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 170 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 230 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 290 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 350 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 410 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 470 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 530 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 590 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 650 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 710 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ============================== ================== 12 30 97.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : CATACGCCATTTAGAAAGTATTAAAACTGCTTATAAACTTTCTTAAATCG # Right flank : CTTTATCAGTTACGATGGCATGAGTTTTTGTGTTCATGGCGGCATACG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //