Array 1 4210-5949 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELD01000026.1 Campylobacter fetus subsp. testudinum strain CFT12S05168 contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4210 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4275 30 100.0 37 .............................. TAACTAGCCAACCAGCATAAAAATTATAAATGGTATA 4342 30 100.0 36 .............................. TGAAACTTTTAGCGACGATCTTATAATGCAGCACGG 4408 30 100.0 35 .............................. GTGTATAGCTGCAATTATATCGATACTAAATTTCT 4473 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 4538 30 100.0 34 .............................. CTGAATTTGTAAAGCAGGAGATTTCTCTTTTATC 4602 30 100.0 36 .............................. ATTAGATGAGCTATTTTTAATGATTTATGATAACTT 4668 30 96.7 36 A............................. CAAAAAAATAATTGAGTTATCGATTAAAATTATGGA 4734 30 96.7 37 A............................. ACATTACTGCTAGTTCTGATATATCTAAAAATGTGAT 4801 30 96.7 36 A............................. TTACAAAGTAGTTGCTAGGATAGATGAAAAAACAAG 4867 30 96.7 35 A............................. TTGTTCCATCTATTAAAAATACGTTTTCACCCACC 4932 30 100.0 37 .............................. TAAGACCAACTACTGTAGATATGTCTCCATACCCTAT 4999 30 100.0 35 .............................. AACTCCCTTACTCTCCATACTCATTTCGCAACTTG 5064 30 100.0 36 .............................. AGCAATATAACCGTTTAGCTTACGTTTGCTAACAAC 5130 30 100.0 34 .............................. CTTATAACTTCTACCAACTAGTTATCAAGTATGC 5194 30 100.0 36 .............................. ATTTAAAGTAGGTGCGGAATGCACGTACGCTGCAAC 5260 30 100.0 39 .............................. TAGAAATTTTGGCTATCTTTAGTGGGGATTTGCAAAGAA 5329 30 100.0 36 .............................. TGTTTCTACTGCTAAAGTAACTTGTATTTATAAAGT 5395 30 100.0 36 .............................. AAAATGTAAAGTAGAAATAACAATATGGATCTACAA 5461 30 100.0 36 .............................. TGCAAGTGCTGTTGTTATCGCGCACAATGCGCTCTT 5527 30 100.0 36 .............................. AAAATTTAAATAACATTTGTCAAATTTGTATTTTTG 5593 30 100.0 36 .............................. AAAATTTAAATAACATTTGTCAAATTTGTATTTTTG 5659 30 100.0 37 .............................. AATCTTTGCTAACTAATAAGCTTATCTCGTTTGATTT 5726 30 100.0 35 .............................. GGCGTAAAAGTCAAATGTCGCCCTGATTTTTATAA 5791 30 100.0 35 .............................. AAACAATTCTTTTTATTATTTAATAATATTTTTTA 5856 30 100.0 34 .............................. GCGATAAAAAAAGCGACGTATATAATCTAATACA 5920 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 27 30 99.5 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAGCTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTAGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : CGTATAGTTTTTATATATTTTTCTTGCAATTCAACGTTTCAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11426-10010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELD01000022.1 Campylobacter fetus subsp. testudinum strain CFT12S05168 contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11425 30 100.0 37 .............................. TTGGTAGAGGGAACTACTGATATAAACTCACGTATTT 11358 30 96.7 36 .............................T TAAGCAGCAATTTGGGCAATTAAATCTTCTTTTAAA 11292 30 96.7 35 .............................T ATAGCTTCATTAAGCGCTTTTATCTTTACTTCCTT 11227 30 96.7 36 .............................T GCTCTCATAGCCTCGTAAAATAGTCTATCGCTCGCT 11161 30 96.7 34 .............................T GCTTCCAGGGGAACCTATAACAGTGAGAGTTAGA 11097 30 100.0 36 .............................. TCTCCATTGTCGATTTCTGGGGTCATGCTCTCTCCG 11031 30 100.0 35 .............................. GCGTCGCTAAGCTCTGCAGAAGTTTTTTCTTGCAA 10966 30 100.0 36 .............................. AGCTCATCCGCAAGGCTTACAAGCTCTGCGCAGTGG 10900 30 100.0 36 .............................. CTTACGCCCTCAAAATAACTAGTATTTGCACTTAGC 10834 30 100.0 37 .............................. AATACAAATTTAGCTCCAGCACTGCTTGCTAAGCCCT 10767 30 100.0 36 .............................. ATTTGTTGGAGCAGGATGCGTAGATGGCGAGGGATT 10701 30 100.0 37 .............................. ACAATTTTAGCAAATAAGCAGCTAACTTGCAATAAGA 10634 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 10568 30 96.7 37 ....A......................... TTTTTATAAAAATTTATGAAACTTTTATTTATATATT 10501 30 100.0 37 .............................. ACATCGCCACTTATAATAAAGACAGGCGTTATCTTTA 10434 30 100.0 36 .............................. AGAATTATACTTAATCACTCAGGACCTAAGTCTTGT 10368 30 100.0 35 .............................. AATTTACGCAGATGAAACAAAATTCCATATATTTA 10303 30 100.0 35 .............................. ACAGGGTTGGGATCTGTTATATCACCACCGCCACC 10238 30 100.0 37 .............................. TAATGGCTTCTCTGACTGGTAGTTCTCTGGTTTCTAG 10171 30 100.0 35 .............................. TAACTAGCAAAGCAAATGCTAAAATTTAGATCATT 10106 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 10039 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 98.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ATCAATAGTTATCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : CATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGCATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 126698-124955 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELD01000005.1 Campylobacter fetus subsp. testudinum strain CFT12S05168 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 126697 30 96.7 36 ......................A....... ATGTGTGCGGAGCCGATATAGCTTGTTCCTACTTTA 126631 30 96.7 37 ......................A....... CAGTAAAGCCATAGCATTTTTTAGAGATAGTACGTTA 126564 30 96.7 36 ......................A....... GTTGATATAAAAAATAAGTTTAATGCTAACTATGAG 126498 30 96.7 36 ......................A....... TTTCGATTTGATATTCTCTTTCTCTTTTTGCTTGCT 126432 30 100.0 36 .............................. AAGTTAATCGAGATCGCATTTGATGAAAACGTGAAA 126366 30 100.0 35 .............................. TTTTAAAGGTAGCTGGACTTTTATATTCCAACTCA 126301 30 100.0 36 .............................. AATTCCGCGCAATATTTTCCAGAATGGTTAAGCCAT 126235 30 100.0 36 .............................. AATACACTTTTAGAGGCGTCTTTGGCTACTGCTTCC 126169 30 100.0 36 .............................. TGCGTTTTAGAAACGTTGCCTACTAGTTTATCCATT 126103 30 100.0 36 .............................. TTTTTTAAATTCCTAAGCTCATTTAAGACGGTTTTA 126037 30 100.0 36 .............................. ACCAAAATTTTTTGCCTTGTTTTTCTGCTCTCTTTA 125971 30 96.7 36 ...............G.............. TAACTAGCGCTAAACGGGCTAAGAGTTTTTATAAGT 125905 30 96.7 36 .............................T TTAAATATCTCACGGCTTTTAAATAATGCGTTTATT 125839 30 100.0 35 .............................. AAACTATGCCGAATCGTTTAAAAAAGGCACAGGGA 125774 30 96.7 36 ...............G.............. TAACTAGCGCTAAACGGGCTAAGAGTTTTTATAAGT 125708 30 100.0 36 .............................. AGCCCACCAAGCTCATCAGCCAGCCTGTTTATTTCA 125642 30 100.0 36 .............................. TGGTCGTATATTTCTATATCCCTACCACTTCTTACA 125576 30 100.0 34 .............................. CTAAGTATTTCAACCCGGCTTCCTTTTATATCTC 125512 30 100.0 36 .............................. TTCCTCTTATTGTTTCTGCTGTTATTTGATTTATGT 125446 30 100.0 35 .............................. TTTTCTTTACTAGATTTGCCATTTTTTATCCTTTA 125381 30 96.7 35 ...............G.............. ATGATACAAAGCGTGGTTGGTAGATATTATATTTC 125316 30 96.7 36 ...............G.............. TGTAAAGAGATCTACGGATCAAGCTTGGACCTTTTT 125250 30 96.7 36 .............................T ATATTATAAATAGGCAGAAACAAGAATTAGAGAGCT 125184 30 96.7 35 .............................T GTTATATCTTTTATAATAAAATCAAAATACCAGAC 125119 30 100.0 37 .............................. TGGTAATATAATAGAAGTATTTATCTAGTACCAATCT 125052 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 124984 30 76.7 0 ..........A....AGC....A..A...T | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 97.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ATTGAAACCAGTAAAGCCATAGCATTTTTTAGAGATAGTACGTT # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAAAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTGAGCCATTGTATAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGACAATGGGTATTTTATAGTTTTTAATGGAAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 84-246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LELD01000094.1 Campylobacter fetus subsp. testudinum strain CFT12S05168 contig00095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 84 31 100.0 34 ............................... AAGGAGTACCATATTTTAAAACACCTAATCTACC 149 31 100.0 36 ............................... TGGGAAGCAGAAGTAAGTACTATAAGTTATACGAAA 216 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 GTTTGCTAATGACAATATTTGTGTTGAAACT # Left flank : TTCAATAGTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : ACTCGGGGGTAGAGTATAAAATAACAGATGAGCTCGTTTGCTAATGACAATATTTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //