Array 1 67101-65241 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWA01000020.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5767 NODE_20_length_76400_cov_64.330169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67100 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 67039 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 66978 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 66917 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 66856 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 66795 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 66734 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 66673 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 66612 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 66551 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 66490 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 66429 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 66368 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 66307 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 66246 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 66185 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 66124 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 66063 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 66002 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 65941 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 65880 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 65819 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 65758 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 65697 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 65636 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 65575 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 65514 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 65453 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 65392 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 65331 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 65270 29 96.6 0 ............T................ | A [65243] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9193-7213 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWA01000039.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5767 NODE_39_length_14518_cov_68.312348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9192 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 9131 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 9070 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 9009 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 8948 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 8887 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 8826 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 8765 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 8704 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 8643 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 8582 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 8521 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 8460 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 8399 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 8338 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 8277 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 8216 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 8155 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 8094 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 8033 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 7972 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 7911 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 7850 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 7789 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 7728 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 7667 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 7606 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7545 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7484 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7423 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7362 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7301 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7240 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //