Array 1 2298722-2300567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041247.1 Raoultella electrica strain DSM 102253 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================== ================== 2298722 28 71.4 190 T...G...G....AC...C.G...C... CGATAGAAAATCATGCAAAGACCCTACCTTTCAGGCGGCTAACACGTCTCAATAACGACATTTGTCATGTTTCATTTTAGTCATTTGTCGGGTTGTTGAGGGTTTAATCGCGGGCACGGTTGCCAGGGAGGCAGGATTATGCAGTTGACTACGGAGACCTTTTTATTTGTTGTTTTTGTAAGTCATTGAT C [2298745] 2298941 28 71.4 68 T..T.T..GA...AT........T.... AAAGGGTGAGATGAGTAAATTTGAAGTTTTTTATATATAAAACAAAGAAGTGAGTTGATATTATTTCA A [2298948] 2299038 28 100.0 32 ............................ TGCTGATATCGCATTATCAATTTTGTCTTCGA 2299098 28 100.0 32 ............................ TATAACCCGGTGGTGGCAGAGCTGGATTTTAT 2299158 28 100.0 33 ............................ CTGAGACAGATCAAACATACAGCCGGTGAGATA 2299219 28 100.0 32 ............................ TTTACCCACCCCAGTAAAGCCGGGAATAGCTG 2299279 28 100.0 32 ............................ CGTCAGCTGCGGCAATCAGCGTGCCGCCGTCG 2299339 28 100.0 32 ............................ GTACGGGCGGGTCGCCCAGAACTCGGCTGCAG 2299399 28 100.0 33 ............................ ACCAGTCTGGATAACGAACACGACCACAACGGT 2299460 28 100.0 32 ............................ GGCTGACCCGGATCAAGCAGGTCGAGCACATC 2299520 28 100.0 32 ............................ AGTACCGGGGAACGCGCCTTCTGGATGGTTTT 2299580 28 100.0 31 ............................ AGAAGAGAACGATCTAACAGATAGATCACTG 2299639 28 100.0 32 ............................ ACCAAGGGATAATCAATTCAATATCCCCTATA 2299699 28 100.0 32 ............................ GGAATGACACTGATTCAGCGTCAAACGCTTCC 2299759 28 100.0 32 ............................ ACTTGCGATGGCGGGAATCTCCGCGACGGTAA 2299819 28 100.0 32 ............................ GCCGTGAGGTTGTTGAGGCATGGGTTGATGAA 2299879 28 100.0 32 ............................ AGAACACCAGCTGATTCAGGATGGCCGCCAGC 2299939 28 100.0 32 ............................ ATCTGTAGCAATAACAATGCGTCCAATGTACT 2299999 28 100.0 32 ............................ AAAACGCATCATTGAATGCGTCTAATTAACTA 2300059 28 100.0 32 ............................ TTTACCTGCCGCGCTGAAAGGCTGGCACGGGC 2300119 28 100.0 32 ............................ GCTGGCGCATCGATGCTCGAGCTGAACAACCG 2300179 28 100.0 33 ............................ GATGAAGTTTTCCCCGTCAACAAAGAGGGTAAA 2300240 28 100.0 32 ............................ TCTCGCGCCAGGCCATCAGCTCGCGCAGCTCC 2300300 28 100.0 32 ............................ ATACCGTGGCGGTTGAACGCGTGCAGGAAGTC 2300360 28 100.0 32 ............................ AGTAGATTGCATGGCAGTGGCAATGCAGGCGG 2300420 28 92.9 32 ..G............A............ ATGACATTCGTCGCGAAAATCTCAAAGACCTG 2300480 28 92.9 32 ..G............A............ ATGACATTCGTCGCGAAAATCTCAAAGACCTG 2300540 28 96.4 0 ..G......................... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================== ================== 28 28 97.3 39 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCCCCCGATGAGGGTTCCGCTTGATATCGCTCACGGCAACGGAAACTGTTGAAAGGCCGGATGGGCTTCGGCGATGTCGCGATGGGCGCGAATATCCTGGAGGCCGTTAGACTCGGCAATGGCATCGCGCTGGAGCGGCGCTCGCTGGTGCAGGGCGCTATCGACCGCGGAGAGCTGGTCCAGGTCACCGCCTGCTCTGCGCCTTATCCCTGGCCGTACTGGCTGGTCACCCCGCAGCAAAGTGAAAAGAAAGCGGAAGCGGCGGTATTCATCGCCTGGCTTAATGAAGAACTTGCGGCCTGGCGTCAGCGGGGAGATTTGCCAGCGCCGCTCTGGCAGTGTTCCGGCCATGCAACGGGCGCGCTTAACGGTCGGCGGACTGGGCAAACTCCCGCGCCAGCGCCAGAAACGCGGCCAGCCCGGCGGAGGGGGGCGTCTGCCGGGTGTCCCTGGTGATTCCAGCGCCCGCCGTGCTGGTTGGCTCCGCTTCCCCTCCAGG # Right flank : ATGAGTAAGCGCCCCATCTGCGACGTCTTGTGAAAATTGTCCTGTCTGGCAACAATCGCGCCCATCTATTTTGATGGACACGAACGATGAATTCCCAGACAACAAAAGATATTCCCTGCTTCCGTTCTTATTTGCCTGATGCCCTGCGTTTAAGATTTGAAGATAAACTGACCATCCGGGCCATCGCTCAGCGCCTCGGTCTCAGTCATTCCACAATACATACGCTTTTTCAGCGCTTTATTGCATCCGGTATCGCATGGCCATTGCCCGATTCAGTCTCATTCGCTCAGCTTGACGCCATCCTTTATGCCAACAGAAAAAATGAATCCACTCGCCCTGAAATCAGCGAGGAAAAATGGCGAAAAGAACGGCGAGCCAGCTACAGCCGTGAATTTAAGGTCAGTCTGGCTAAGCAGGCATTACAACCCGGTGCTGTTGTTGCCCGGATCGCCAGAGAGCACGATATCAATGATAACCTGCTGTTTAAATGGAAAAGCCAG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.61, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2314085-2315012 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041247.1 Raoultella electrica strain DSM 102253 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2314085 28 100.0 32 ............................ CGCAAATAACACGATCTCTGAACAGGTCAAGA 2314145 28 100.0 32 ............................ GGGTAGCGCCGCTTAATTAATGCATCATTGAT 2314205 28 100.0 32 ............................ TGGCGGGCATGGTCAGCGCTGCAGATATCGTT 2314265 28 100.0 32 ............................ ATCAGAGAGGCGGCATTGTTTGACGAGGACGG 2314325 28 100.0 32 ............................ ACCCGTGACGCGGCCAGCGGTCAGGCGTTCCT 2314385 28 100.0 32 ............................ AGTTTAAACCGGGACAGTGAAACAAACGTCAT 2314445 28 100.0 32 ............................ AGCACATCGCTTTGCCTGGCAAGGCACAGATA 2314505 28 100.0 32 ............................ ACATAGAGCAGGCGCGATTGGCGTAGCGAATT 2314565 28 100.0 32 ............................ AGTAACTTTGACCACGGTATAAAGCCCACCAG 2314625 28 100.0 32 ............................ TGGTTGATGCTCGCAACAAGGTTGAAGCCGCG 2314685 28 100.0 32 ............................ AGTAATTCGTCCGATGCCTCGATGATGGCGAT 2314745 28 100.0 32 ............................ TCAAGCCGGAATGTTCCTGGCTCGTCGCCGAC 2314805 28 100.0 32 ............................ GACACCGAATCGTCTGTAAATGTCGGGATGAA 2314865 28 100.0 32 ............................ CAGATCCGCAGCGTTCCGCCATGGTTTTCCAC 2314925 28 100.0 32 ............................ AGAGAGCAGCTTCACGAACGCGCCCGCGAAAA 2314985 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTGCTACCCGCTCACTTTCATCGGGAGTGAGGGTTCGCCCCGCGCTTTTGCGACGAGCAACGTTGCGCTCATTAATGCCCGTTACGCGAAGAATGTCCGCTTTAGACATCTCGGTCCATTCATGAATATTATCGAGTACGCTGACTGGTAGCCCCTGATTGAGAAATTCGATCAGCCGCATTCCCCGATTTGCAGGCAAACCGGCATAGCGCCAGAGCGCGTTGTCAGCAGGCTTCTGCTCGGGAACCCATGTTCTCATTTTTCATCTCCTGCTTTCTGTCATTTGTCATGGTTAAGTATAGTCATTTGTCTGGTATTTGGCAGGGCGATTTTTTGACGAGTCGTACATCCCTGGCAGATGCCGGAGACCCTTTTTTAATGTTGATTTCTAATTATTTGATTTTAAATATTATTTTTTACAGGCTGAAAAAAGGGGGGGAAGCGTCATTATATGAGGTTATCTCGTGAAATCAGTAAATTATGGAGATACTATGTCA # Right flank : ATGACATGTCCTGAATAATTTCAAAGATCTGATGTAGGGGGCAAAAACCACGGGCGTCAAAAACCCGGCAACCCTTATCAGGACACAATCTCACTGCTGTTTTTAAATCGTGTCGGGACTTACTGAGATAAAGTGATTTGAACAGTTCAGCATCTGAAAGAGTATCGAATAACGATTCGCTCATCGTCGGTTCTGAATGAACTTAAATGCCGTGGAACAGGCTGGAATTCTATGGGGTTTACCAGAAAGAGAACGTATGAAAACTTCACACCGTTCGATAACCGACAGACTGTTGCTGATGTCTGCTGAATAAAGAATGGTGCGTCCGAGTGGACTCGAACCACCGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCATTATGGTGCGTTTAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATAAACGCATTATGGTGCGTTCAATTGGACTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //