Array 1 46-601 **** Predicted by CRISPRDetect 2.4 *** >NZ_FAVB01000025.1 Campylobacter fetus subsp. fetus strain 006A-0059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 46 30 100.0 35 .............................. ATAGGTCTTATGGTGGGCGAAGTAACTCAGTTTGA 111 30 100.0 37 .............................. CTATTTGTGATATTGCGATTTGCTCTTTTAAGTCTCT 178 30 100.0 36 .............................. GAAGATACTTTCACTTACTGGTGATGGATGAAGTAC 244 30 100.0 36 .............................. TTTTATAGCCTCTTTAAATGCCATACTGATTGTGCC 310 30 100.0 36 .............................. TTTTTCTTGATACATTGTAGGTTACGGTCGCAGTCT 376 30 100.0 36 .............................. CTTTGAATAAAAACTCACTGCCATTCACGTGCTTAA 442 30 100.0 33 .............................. AGCGTCGTTATACTGCCATAGCAACGCTTGAAG 505 30 100.0 37 .............................. GTAGTAACCGACGGCTGAAAATCTAGCTGATTATACA 572 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : AATTTATACATTCAGAAGAAGTTTCATTTCCAATATCCACAAAACG # Right flank : CG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 2148-84 **** Predicted by CRISPRDetect 2.4 *** >NZ_FAVB01000005.1 Campylobacter fetus subsp. fetus strain 006A-0059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2147 30 100.0 37 .............................. CTAGTGAAAAAAGCAAGGACGAAACAGAAAGACTAGA 2080 30 100.0 36 .............................. TATTTCTTCTTTGGAACCTACATTTTTTACTACCTC 2014 30 100.0 35 .............................. GCAACCATCACCGCCGAAGGTGCTAAAATGGGTAT 1949 30 100.0 34 .............................. CGATGAATTTACTTTGAAAATCTAGTTGTTGCCT 1885 30 100.0 35 .............................. CTTCTGTTTTATGAGCCAATTTAAAGCGGTTAAGA 1820 30 100.0 34 .............................. TCAAAAAGTTCAGATATTTTGATTTCGTTTATCA 1756 30 100.0 37 .............................. TATTTTTATGAACAACTCCATATTTGACAAGAATTGT 1689 30 100.0 36 .............................. ATTCAGAAGAAGTTTCATTTCCAATATCCACAAAAC 1623 30 100.0 35 .............................. ATAGGTCTTATGGTGGGCGAAGTAACTCAGTTTGA 1558 30 100.0 37 .............................. CTATTTGTGATATTGCGATTTGCTCTTTTAAGTCTCT 1491 30 100.0 36 .............................. GAAGATACTTTCACTTACTGGTGATGGATGAAGTAC 1425 30 100.0 36 .............................. TTTTTCTTGATACATTGTAGGTTACGGTCGCAGTCT 1359 30 100.0 36 .............................. CTTTGAATAAAAACTCACTGCCATTCACGTGCTTAA 1293 30 100.0 33 .............................. AGCGTCGTTATACTGCCATAGCAACGCTTGAAG 1230 30 100.0 37 .............................. GTAGTAACCGACGGCTGAAAATCTAGCTGATTATACA 1163 30 100.0 35 .............................. CGACAATCAAATGTTTTTCTATACCATAGAAGATA 1098 30 100.0 35 .............................. AAAAGGTTTCTATTAATCTCACTAGCAAATTGTTC 1033 30 100.0 37 .............................. CGTAATCCAAACAGGGTCTATTTGTGATATTCCTTTG 966 30 100.0 35 .............................. AATAGTTCCATTGGTTCTTTTGCTAGGTTTGGCAA 901 30 100.0 36 .............................. TCCAATATTGCTTTTATTTTTTTCTTATTCATATTG 835 30 100.0 37 .............................. CTTCTTGTCCTTTTGTTGCTTTCAAATCTAGTTTTTT 768 30 100.0 34 .............................. TCCACGATAATAACTCTACTTGCATTGATGCTAT 704 30 100.0 35 .............................. TTTTGAATATCCTGCATACTATCCCAAAGCTTCGG 639 30 100.0 36 .............................. CTGGTGTTTCAAACTCAACTGAATATACGGTAGCTG 573 30 100.0 34 .............................. GCTCTACACTATCTTTATAAGCGATATCAACTGC 509 30 100.0 36 .............................. ATCAAGAAGCCTTTTATCTTGGATAGAGTTTTCTTT 443 30 100.0 39 .............................. AACTGCCTTTTTGCATTCTAGCTCTATACTGATGCGGTC 374 30 100.0 34 .............................. GCTATAGCTTTAGCATTTGCTTCAAAGCCATTTT 310 30 100.0 34 .............................. GGTTTAACACAAGCATAGCGGACTTTGTGCGATA 246 30 100.0 36 .............................. TTTTCCCGCTTCCCCCTTTTTCATTGCAAATTGATA 180 30 100.0 37 .............................. GAAGTAGAAATTCCAGATAGTGAAGCAGAAAAATTAA 113 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 32 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : CTATCTCTCTTCTTCTCATCTCTCCATCATCATTCTCGTGATCAAATCCTAATACGTGAAGCAGTCCGTGAGTAAATAATAAAGCTATCTCATCTTCTACTTTATGACCTAGCTCTTTTGATTTTGAACTAGCTAAATCACTGTTTATAACAATAGATCCAATAGGGAAATGAGGTACATACTCAAGTGGAAAGCTAAGCACATCTGTAGTTTTATCTATATTTCTCTCTTTTTTATTTATCTCTTGCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCACATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATGAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTA # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTAGTAAAAAATGGCTTAATATAGTATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22132-20725 **** Predicted by CRISPRDetect 2.4 *** >NZ_FAVB01000009.1 Campylobacter fetus subsp. fetus strain 006A-0059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 22131 30 100.0 34 .............................. TCCTATCAAATATCCGAACTCTTGCTAAATCTTG 22067 30 100.0 34 .............................. CGCTGGAGTTTTTAAAAGAAGGTGAACGGATACC 22003 30 100.0 34 .............................. TCGCTCCATACCCTTATCTTGCTCTTTTGTTTGA 21939 30 100.0 34 .............................. TGAATGTTCGCCTAGTGCTATGAAGTGCAGTATC 21875 30 100.0 38 .............................. TAGGCTACAAGTTGGCTTTTTTCTTGATATGGAATTTT 21807 30 100.0 34 .............................. CTACAGCCGTGACCTCTTTGCCGTCTTTGTCTAG 21743 30 100.0 35 .............................. TTGCCAAACCTAGCAAAAGAACCAATGGAACTATT 21678 30 100.0 37 .............................. CAAAGGAATATCACAAATAGACCCTGTTTGGATTACG 21611 30 100.0 37 .............................. TGTATAATCAGCTAGATTTTCAGCCGTCGGTTACTAC 21544 30 100.0 33 .............................. CTTCAAGCGTTGCTATGGCAGTATAACGACGCT 21481 30 100.0 36 .............................. TTAAGCACGTGAATGGCAGTGAGTTTTTATTCAAAG 21415 30 100.0 36 .............................. AGACTGCGACCGTAACCTACAATGTATCAAGAAAAA 21349 30 100.0 36 .............................. GGCACAATCAGTATGGCATTTAAAGAGGCTATAAAA 21283 30 100.0 36 .............................. GTACTTCATCCATCACCAGTAAGTGAAAGTATCTTC 21217 30 100.0 37 .............................. AGAGACTTAAAAGAGCAAATCGCAATATCACAAATAG 21150 30 100.0 37 .............................. TATTGAAATTCAAAATAATGGCTATTGGCTAGATGCG 21083 30 100.0 38 .............................. ATAGAAAAAAGATGAGCACCTTTATCTCATCTTTTGAA 21015 30 100.0 34 .............................. TTAAATCCCCAAGTGTCGAATGGCACTATATGTC 20951 30 100.0 37 .............................. GGTAATTTGTCGCGGTAAAGGATTAGCCCGTATTCGC 20884 30 100.0 36 .............................. GAACAATTAAAAAAGATTGAACTAGCCATTATTTTA 20818 30 100.0 34 .............................. TAATAAATATCAATTATAAAAACCCTATTCGCTA 20754 30 83.3 0 ....................TT...A.G.T | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.2 36 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TTTATAAATACTATATTAAGCCATTTTTTACTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGC # Right flank : AAAAGTCAATAGATTTTTCTACTTTTTTTAAAATTATACCTTAAAATTAAGGATAATTCTTTAAAAGCATATCTATCTTACCTTTTATCTCTCTAAGAAGTTTAAAAGCTTCTTGACTTGTCTTTTCAAAATCTTCAAGCCTTGTTACTCGTTGCTCAATTAGGCTTATCTTCTGTTTTATGAGCCAATTTAAAGCGGTTAAGATAATAACCGCTAGAGTGATGATAGGCTCAATATATTTTAATAAGTCCATAATTAAAACTTAAGACCTATAATATAAACTTCTTCAAACTTAACGTTATTAAACGTTTTATTTTTTAAAGCAGTTTTTATCTCGTCTTCGTTAAAAGTGCTTTTTGCTATAAAGCTAAAAGTATGTTTGTTACCTTGTGCGTTTTTACCGGTAACGGTAACTTTTACGCCGTCGGCTTCGCCTTTATCGATTGTATTTTTTGCTTCGTAAATTTCATAAAGACCGTCTAAATTATTTGCGCAAAAAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //