Array 1 254321-251851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZUU01000038.1 Salmonella enterica subsp. enterica serovar Mishmarhaemek strain OLC-1602 Cont0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254320 29 96.6 32 ............................A CTATTTTGTATTTTGCCAACGGCGATCAATCC 254259 29 100.0 32 ............................. CAAAAATGATTACTATAATTCCATGTTGAACA 254198 29 96.6 32 ............................A AAAATCTCACCCGCAAAAAGCACCCTGTAAAA 254137 29 100.0 32 ............................. TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT 254076 29 100.0 32 ............................. TGGTGGATTTCGGCTGGCGTTTCCCCCAAACC 254015 29 100.0 32 ............................. ACGAGTCAGAGCATATTACCCCCGAACGCAAT 253954 29 100.0 32 ............................. CCCTCCAGTTCAGCGTAATAGTCAGCACGGCG 253893 29 96.6 32 ............................T TATTCCGTTAGTGATTGCGTTAATACGCGGAC 253832 29 100.0 32 ............................. CAGGTCATTGAGGCTGTAGCGGCCTTCTGCAT 253771 29 100.0 32 ............................. CGCCTCTCCGAAATAAAAGATGAGGGGGCGGA 253710 29 100.0 32 ............................. CAGTCGCTCTACACGCACATCGGTGATTTCCA 253649 29 100.0 32 ............................. GCGTTGCTACGCGGTACACCGCAGGAGCGAGC 253588 29 100.0 32 ............................. GCAACTCATCACGATCACTTACAGGTTGGCTG 253527 29 96.6 32 .............T............... AGGGGGTAGTAATTAGGGAGATTACAAAATTC 253466 29 100.0 32 ............................. TTCTCAACCTGCGGCGGTGTAGAAAAACGAGG 253405 29 100.0 32 ............................. CAGGTCCATTCCTGTTTAATGCCCTCGCTAAT 253344 29 100.0 32 ............................. CGCCGGGGTTACCGCGCGGCGCTCTGAATGTG 253283 29 100.0 32 ............................. ACGACGGCACAAAAGAAATTTCCACCGTGGAT 253222 29 100.0 32 ............................. TGATTATTCGCGAATTGAAGATGCATTCAATG 253161 29 100.0 32 ............................. GTTGTTCAGGAAGAACAAACTTTTATGCTCAG 253100 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 253039 29 100.0 32 ............................. TTGGTGACATGACGGAGGAATTGACAAATAAA 252978 29 100.0 32 ............................. GATCTGGAGCTACTCAGCAAAGCGGAAACAAA 252917 29 100.0 32 ............................. ACCAGACATGATGATTTCCCCTCGATACACTG 252856 29 100.0 32 ............................. CGGCGCAGATGAATCTGCCAACAGGCGCTCTG 252795 29 96.6 32 ............T................ ACCGTTACGCGCATCTTGAAAATCGGCTTCGA 252734 29 100.0 32 ............................. CGTGATGCCGGCTACGCGTCAGCAGACGTAGC 252673 29 96.6 32 .......T..................... GCCGGTGCAAAATTTGGTGCTAATGATCGGCA 252612 29 100.0 32 ............................. GGCCAGCAGCGCTTTCATTGCACATGCTAGGC 252551 29 100.0 32 ............................. CGGTTACTGTCCGCTTCGAGCCCAGCTCTGGA 252490 29 100.0 32 ............................. GCTTTTTTCCCGGTAATCGGCGGTAAACCAAA 252429 29 100.0 32 ............................. CGAGTACCATAACCACACAAAGCTATTCACAG 252368 29 100.0 32 ............................. CTTCTATGTTGTGCGGCAACGCCCGTTTTTAT 252307 29 96.6 32 ............................C TGATCATCGTCAGTGAGAACGAACGCCTGTTT 252246 29 100.0 32 ............................. TCCAGTTTGACCAAATAAGAGAAGCGCAAAAC 252185 29 96.6 32 ............G................ CTCTGCGCACACTTTCGGTAACACCGGAGCAA 252124 29 100.0 32 ............................. GCAGAAGAGCTCGCAGGGAAACTTGACGCAGC 252063 29 100.0 32 ............................. TATGTTTGTCAGCAACTGGCGCGCCTGTTCTT 252002 29 100.0 32 ............................. GCGATCATGCGGGTGAATCAAGAGCGTCACTG 251941 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 251880 29 96.6 0 A............................ | A [251853] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271833-270584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZUU01000038.1 Salmonella enterica subsp. enterica serovar Mishmarhaemek strain OLC-1602 Cont0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271832 29 100.0 32 ............................. AGCTGATGAACTACCAATTACGCTTAATTGGT 271771 29 100.0 32 ............................. CAGCCGAGCCTCCCCTGGCTGGATCGCCAGCA 271710 29 96.6 32 ............................T TGTTGATACGTAGCTCGGCGCACTGATTCAGC 271649 29 100.0 32 ............................. CCGGACAGAAGACGTGGGAACAGAAATACGGT 271588 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAGCGCTACTACGCAC 271527 29 96.6 32 A............................ GCATTGGCCCTGTATTTGATGCTCTGCCGGAT 271466 29 100.0 32 ............................. GAGTGTTTAAAATGGTTTTCTATCACGGTACG 271405 29 100.0 32 ............................. CCGGGGCTATTGCGCCAGAGCAGTAGCGGCAG 271344 29 100.0 33 ............................. CTGGTGGACGATATCGTTAGAAACTGGCTTGAA 271282 29 100.0 32 ............................. CGCTTTTAGCACCTTAATCATTTCATCAGAAT 271221 29 100.0 32 ............................. TTGGCTGAAGATTATGCCGCATTGTCAGGCAG 271160 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 271099 29 100.0 32 ............................. TGGCTGAATGCCAAAGAAGAGGATATTTCAAA 271038 29 100.0 32 ............................. GTAGAGATAACGGGAAGTATTTTTGGTCGCAG 270977 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 270916 29 100.0 32 ............................. ATTTTCACTACTCTCTATCTGGCAACAGCATT 270855 29 100.0 32 ............................. CGTTACCTGTCTGCGCCGGGACAGGAATTATT 270794 29 100.0 32 ............................. AGTTACTGATGCAGACTGCGGATCTTAATCGG 270733 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 270672 29 96.6 32 ..............C.............. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 270611 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCACTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //