Array 1 870-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLY01000049.1 Pseudomonas aeruginosa strain Pae_CF67.04j CF67.04j_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 869 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 809 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 749 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 689 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 629 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 569 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 509 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 449 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 389 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 329 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 268 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 208 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 148 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 88 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAGTTCACTGCCGTATAGGCANN # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLY01000106.1 Pseudomonas aeruginosa strain Pae_CF67.04j CF67.04j_contig_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 61 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 117 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 177 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 237 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 297 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 357 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 417 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 33 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10312-8963 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDLY01000044.1 Pseudomonas aeruginosa strain Pae_CF67.04j CF67.04j_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10311 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 10251 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 10191 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 10131 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 10071 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 10011 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 9951 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 9891 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 9831 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 9771 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 9711 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 9651 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 9591 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 9531 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 9471 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 9411 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 9351 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 9291 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 9231 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 9171 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 9111 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 9051 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 8990 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //