Array 1 161479-160594 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJS01000007.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N47725 N47725_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161478 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 161416 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 161355 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 161294 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 161233 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 161172 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 161111 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 161050 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 160989 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 160928 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 160867 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 160806 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 160745 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 160684 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 160623 29 96.6 0 ............T................ | A [160596] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178986-177738 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHJS01000007.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N47725 N47725_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178985 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 178924 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 178863 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 178802 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 178741 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 178680 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 178619 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 178558 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 178497 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 178436 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 178375 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 178314 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 178253 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 178192 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 178131 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 178070 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 178009 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 177948 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 177887 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 177826 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 177765 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //