Array 1 25755-23650 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMX010000026.1 Chromobacterium vaccinii strain A15 Contig_26_63.0452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25754 29 100.0 32 ............................. AAACTTTACATATGGCGTAATGGGTCACGGAT 25693 29 100.0 32 ............................. GCAAGAAATGACTGACAATACACTGATGACTG 25632 29 100.0 32 ............................. GGAATGGACCAGTCTGAACTTGCACGCCGCGT 25571 29 100.0 32 ............................. CTAATACCCATCTCCTCGGCGACCTCTGATTT 25510 29 100.0 32 ............................. TTGTCGTTGAGCCAAGTCCATATTCGACCCCA 25449 29 100.0 32 ............................. CTGCGAGCGGGTATTCCGTCCCGACTTAATCG 25388 29 100.0 32 ............................. CATCGGTGACATGTCAGCCTCCGTTGGGCGTA 25327 29 100.0 32 ............................. CTGATAAACGATTTGCTGCTATACGCGGATCG 25266 29 100.0 32 ............................. GAATATCGCTATCTCTCCCCGGTTTTCACCTA 25205 29 100.0 32 ............................. TAAATCGCCCATTTTGAAGGGGCAAACCTGGA 25144 29 100.0 32 ............................. CTTGTCCAGGTATTCAGAGACAGTGCCATCAA 25083 29 100.0 32 ............................. ACTTTGCCGAGTACGCGCACGCCAAGCGCGTT 25022 29 100.0 32 ............................. TCCACAGATTGCCCAGCGGCGCGTGGCGCGGT 24961 29 100.0 33 ............................. ATGTCTGGGTGGAGCGAGCATCCGGCGGCCCAC 24899 29 100.0 32 ............................. GACTGCGAGTTGTTGGAACGGCTCGCTATCGC 24838 29 100.0 33 ............................. TTGCCCACCTGCTCGCACACCACCAGCGCGGAG 24776 29 100.0 32 ............................. CTCAGCTCGACGAGCAGCGCGGAATTTAGCCT 24715 29 100.0 32 ............................. TAGTGCTGAGTCACGAATTTTGGGATCAGGAA 24654 29 100.0 32 ............................. AGGAACCAGGCGGTGTCCGAGTTCAGCCACGG 24593 29 100.0 32 ............................. ATCAATATCACCAGGACTAGCCTTGTCAGTTA 24532 29 100.0 32 ............................. AGGCCCGCTCATGAACAGCCACTACACCCACG 24471 29 100.0 32 ............................. CAGATTAGATAAATTGCCGCCGTCAGTATTAT 24410 29 96.6 32 ............................C AGACCAGCGGCACATTCAATGACTGCGGATTG 24349 29 100.0 32 ............................. AATGAATCCAGCAGATAGGTCACGTCGCCGAT 24288 29 100.0 32 ............................. CCCAGCGGCACCATCCCGCACTTGCTCGACCA 24227 29 96.6 32 ...........................T. GTTCTGCGCCGCGCGGTTTAATTACACGCGCT 24166 29 100.0 32 ............................. AAGTTGCTGACGTCGCCGTCCAGGTCGTTGTA 24105 29 100.0 32 ............................. TCGTTGATTACGGTCTTTGTGGTCTTGCCATT 24044 29 100.0 32 ............................. CACCAGCTCCAGCAGCTCCGGCGCCACCAGCT 23983 29 96.6 32 ..A.......................... GTTCAGGTCCAGATCCTCGGCCAGCCGCCGCT 23922 29 100.0 32 ............................. TTCTGGCGGCTCGCGTTATACCGCGCTGCTGC 23861 29 100.0 32 ............................. TACCAGCGCGCCGTCCGCATCGAGCTGCCGGA 23800 29 100.0 32 ............................. GCTTAGCGGCGATCAATTCCCACTTCCTGGAC 23739 29 100.0 32 ............................. CATGGTGCCAGGGTTCAATAATCGCAGCCATG 23678 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.6 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCTGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGGCGGGTTGGACGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCGCCTGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTTCCAGAGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTAGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAGGCTGAAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCTTTGTTTCGAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCCCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGATACCCCGGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 37969-36110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMX010000026.1 Chromobacterium vaccinii strain A15 Contig_26_63.0452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37968 29 100.0 32 ............................. GGATTGGAGTTCTTCTCGTAGGGTCATGTTGG 37907 29 100.0 32 ............................. GGAGGCTCAGGCAGGGATAAATTACCGGGCAT 37846 29 100.0 32 ............................. CCCATTCGTTTCAAAAATGCCGGTGGATCAAA 37785 29 100.0 32 ............................. CCGAATTCGAGGTCGAGCTTGCCGGCGCGGGG 37724 29 100.0 32 ............................. CTTGGGCGCGCCAGTGATCATCCCCCACACCA 37663 29 100.0 32 ............................. GCCGTCACCCATGGGCATTCGTCCGGGTGCGG 37602 29 100.0 32 ............................. TACCGTCGCGGTGTGGCGGAGATCACCGACAC 37541 29 100.0 32 ............................. AGCCATGCAGGCCAAGTCTACGGTTTCCAGTA 37480 29 100.0 32 ............................. TTCCAACTGCCGTTCTCCGTCCACGCAGTATC 37419 29 100.0 32 ............................. CAGGCTGGACGGGAAAATGATTCCAGACCACG 37358 29 100.0 32 ............................. GCCGCCTAAGGGCGGCCAAACTTTTGGAGCAA 37297 29 100.0 32 ............................. ATGCTGGAGATGGACGCCAACCCCAACACGGT 37236 29 100.0 32 ............................. ACATGTTGCGCTGCGGGCGGGGGCGAAGCCCC 37175 29 100.0 32 ............................. TTGGTGGGCATCTATGATTCCAGCGCGCAGGG 37114 29 100.0 32 ............................. AGCCCAAATCATGACGCAACCCCAATCGCTGG 37053 29 100.0 32 ............................. CCGACGAATCCAGCGCCCGACGCCGTGGCAGA 36992 29 100.0 32 ............................. GTGGCGCACCAGCACCTGCCACAGCTGCAACC 36931 29 100.0 32 ............................. GGGGATCGCATTGTCGCCAGCATTGGCTACGA 36870 29 100.0 32 ............................. GCAGGAATGGCTGAGGATTTGGCAGACAATGC 36809 29 100.0 32 ............................. GGATACGACGAATATGCATTCTCGAACAATTT 36748 29 100.0 32 ............................. CCGTGGCAATCTCGCGAATAAGAAATTGCTGG 36687 29 100.0 32 ............................. AATACCGTGTCGATGCCCAGCGGCTCGCAGAG 36626 29 100.0 32 ............................. AAAGTGCCCGGCGGCGGGACATATGGAAACAC 36565 29 100.0 32 ............................. ATCGGTAATGACGGTTTTATTGGTTTTACCGT 36504 29 100.0 32 ............................. ACCGCCAGTCGGCGGTCTTGTGGGCTTACATC 36443 29 100.0 32 ............................. CCCTACCAGTCGAGAGACGGTATCAGCGCCAC 36382 29 100.0 32 ............................. AATTAAAACATTGACCGCCCATCATAGTGCCC 36321 29 100.0 32 ............................. CCCGAAGGGGCGAGACTCGCCGGCCTCTTGGC 36260 29 100.0 32 ............................. AAGGTGCAAATCCGCGCCTACGGCTACAGCAA 36199 29 96.6 32 ............................T CGGGTTATCTCCACGTCCAGCGCCAGCTCCAG 36138 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACTGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCCGCGGAGCCTGCCGTCCATGGCAAGCAAACCCTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCCGGTCAGTCGTCCAGGCTGCTGCTAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCAATGTCGTTTGCTGGCCATGGGGCGACGGTTTCCCATGGCTGGCAGACGGCATCGCCAGGTTATTCAATTGATCATTTTTTAGGCTATAAAATCGGTAGATTTTTAGGATGAGTTTTTATCTTTAAAAATCAAAATGTTGAAATTGGT # Right flank : CTCGAAACGCCGCCGATGGATTCTGCATTCAAGTATTCCGCACCTAATGTGGGGATCCATTGCCTGGAGTCTTACCGCTATATCAGTCGTTCAAGAGTTATCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGAGCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGACATGACGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGTCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGACCGATAGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46489-45239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMX010000026.1 Chromobacterium vaccinii strain A15 Contig_26_63.0452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46488 29 100.0 32 ............................. CAATGGTAATCAATTCACGCTGTATGCCAGTG 46427 29 100.0 32 ............................. TTCGCAGCAGAGCTAAAGAAGATGTCGCAACA 46366 29 100.0 32 ............................. TCAAACCCCATCCGTCTCTCCTTGGATTTCTT 46305 29 100.0 32 ............................. TTTGTTTCGCAAGCAGCGAAACTTCTGCTCTG 46244 29 100.0 32 ............................. GGCAGTCGCCGCGCGCGCTGGACATCGACAAA 46183 29 100.0 32 ............................. GTGAACCAGTACTTGTCCTCGTCCGGCAGGTT 46122 29 100.0 32 ............................. GGCAAGGAGTTATTGCAATGGATTGAACTGCC 46061 29 100.0 32 ............................. TTCTACACCGTGGTGGCCGATGCCATGGCGCT 46000 29 100.0 32 ............................. TCATGGCCGGTCACCATCCCTGAGCTGTATCC 45939 29 100.0 32 ............................. CGCCCTCAATGGGACGCGCCTCTTGCACGCAT 45878 29 100.0 30 ............................. TTGAACCCGATCTGGCTGTATACCGGCCGG 45819 29 100.0 32 ............................. GTAGGGAATGACGGTGAGCTCGCCAATGGTGG 45758 29 100.0 32 ............................. CGCCGCCGGCATGCCGGTTTTATTACCGGAGC 45697 29 100.0 32 ............................. CGACGCTGGCATGCCGGTTTTATTACCGGAAC 45636 29 100.0 32 ............................. TCACTCATTGGCAATGAGGGAGGCTACAGCAA 45575 29 100.0 32 ............................. GCGGGCATAACCGGCACTGGCGCCGGCAGTTT 45514 29 100.0 32 ............................. CCAGTATTTGCTCTTCGGATCTCCCGCAGATC 45453 29 100.0 32 ............................. TCCGATGCGATCGCATGGGCAACTCAAATGGA 45392 29 100.0 32 ............................. TCAGCGTAACCAAGAAGGGCGCGCGCTGGGAG 45331 29 100.0 32 ............................. GAGGCCGCATGATCCCGCTCCACCTGCACGAC 45270 29 93.1 0 ..A...........T.............. | GTT [45243] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : GCCAGAATGCGCGCCAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCGAGGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCAGACAGACGCTTTTTGCTTGCATGTCGATGGAATGACGGTAGGCTATGGAGCCTGGAAACCTTGCCGTGCAAGCTCCGTGCTTCGTTTTTCGAAATGATGGCGAAGGGAAGATTTCCTGATGCCGTGTGGCGCTTGGTGGGACGATTTGAGCGGCGGTTTTCGACCAGAAAAATCGGTAGAATTTTGAGGTGGTTTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : GCGCGGGCTGGAATGGTGTCGCGGCGCTGCCAGCCTGGCCGCGTCCGAAAACAAAAAAGCGCCCGTGGGGCGCTTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAAGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGTCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //