Array 1 1638421-1637373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004391.1 Pasteurella multocida subsp. multocida OH4807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1638420 28 100.0 32 ............................ TTTTTCACCAACGAGATATGCACGACCACCAC 1638360 28 100.0 32 ............................ AACTATCACTTGCCTTTTCTTTTACTGCAATG 1638300 28 100.0 32 ............................ GAAACCAAAAGCAAAAACACAAGCAGAAAGCG 1638240 28 100.0 32 ............................ TTACTCGTTCTAATGTTGGTATGACAGCGTAT 1638180 28 100.0 32 ............................ TTGCAGTCTGCTAACGTTTTTGAGCAAGTCGG 1638120 28 100.0 32 ............................ TAGCCCATCATTGACTACTTTTAAAGGGGTAG 1638060 28 100.0 32 ............................ GTTAGTCGATGAGAAAGAAAAAGACAAACAGA 1638000 28 100.0 32 ............................ TCCAGTTTTGACTTTTTCAATCATTATAAATC 1637940 28 100.0 32 ............................ AGCCACTCTACCAACTGAGTTAACTATCCTAA 1637880 28 100.0 32 ............................ AATCCGTGCTGATATGATCAATCAAAGCTCTA 1637820 28 100.0 32 ............................ ACTGTCACCTGCCATTGCTCTCTTATATGCAA 1637760 28 100.0 32 ............................ TTAAATTAAAATCCCTAATCACAAAGCACAGA 1637700 28 100.0 32 ............................ GTATGCCATTGTTAGACTGAACGATGCAACGC 1637640 28 100.0 32 ............................ AACGCCAATTTGTTCTAAATGACCGATTAAAT 1637580 28 100.0 32 ............................ ATATTATGGTCTTGATTTTGGGTTTGCCAAAG 1637520 28 100.0 32 ............................ GCTTTTCACGCACACTGGCAGCGGCTATCAGC 1637460 28 89.3 32 ................ATG......... AGACATCAGGACTTAAAGGATAATCCAGAAAA 1637400 28 78.6 0 GT.A..CAT................... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 CATCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATATAGTGCGGATACATATTTACACCGTATTGGACGTACCGCGCGTGCAGGTAAAAAAGGCGTGGCAGTTTCTTTTGTGGAGGCTCATGACTATAAATTACTTGGTAAAATCAAACGTTATACAGAAGAATTATTAAAAGCACGTGTGATTGACGGCTTGGAGCCTCGCACTAAGGCACCTAAAGATGGCGAAGTCAAAACAGTAAGTAAAAAACAAAAAGCACGTATTAAAGCGAAACGTGAAGAGAAACAGAAGCAAACTCAGCAGAAAAAAGTCAAATTACGTCATAAAGATACGAAAAATATTGGTAAGCGACGTCAACCCAGCGGACAAGTTCATCAACTTGAGTCCTAATTTCTATTAAAATAACCCTTTTTTCTTAGGGTCTTTTTAAGTCAATAAGATCAAAGGGTTATGTTTATCTCTGAAAAAAAGAGTTTTGTCTGTAAAATAAGCTAAAACGTGATAGATTAAGGGGGGTGAATGACACTGCTTTA # Right flank : GATAAGTCTCGCTCAGAGCACCAAATTAATAGCATCGCTAGCGGTGTTCAGTGAAATACTGTGCAGTGTGTTGCAGGTGTTTTCCCCCTTATGTAATAAGAGGGGGAAATGGGGATTTTATTGAGATATAGTGCTTTCTTTTGGATAAATTGCCCCCAAACTGACCGCACTGGCGCCGGTGACACTTGGCAAATTGGCGGGCAGGTTGTTGAGGCGTTGGTAGGCGAGCCACGCAAAAGCGGCGGCTTCGACATAGTCTGCATCTAAACCGTAGTCATTGGTGGTTTGGACTTGCCATTGAGGTAATAAAGCTGTGAGGCGTTCCATTAATAAGCTGTTTTTTACGCCACCGCCGCACACTAATAAGTGGCGTGCTAAATCCGTTTTAATCTGATTGAGCTGATCCACAATGCTTTGTGCAGTGAGTTCCACAAGGGTGGCTTGCACGTCTTGCGGTAAAAGTGCGGTGTGTTTTTCTAATTTTTTATGAAGCCAAGCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CATCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1642093-1640745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004391.1 Pasteurella multocida subsp. multocida OH4807 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1642092 28 100.0 32 ............................ TTTTTATATTGACAAAGAGGCAGATTGTTATA 1642032 28 100.0 32 ............................ TTCTTGTGTCATGAAAATGGAGATGTTCAAGT 1641972 28 100.0 32 ............................ AATTTCAAGTTTTATATTTGTCATCATCTACT 1641912 28 100.0 32 ............................ AATTCTTCCCGCGTAATTTCCAACATTTTGAT 1641852 28 100.0 32 ............................ AATTAGTAGTTCGCTTTTCATTTTATCTGCTC 1641792 28 100.0 32 ............................ TGCTTTAGCGGAAACAGGTATCAATACTACAA 1641732 28 100.0 32 ............................ TTCCAAGGTACTACTCTTTCGGTTATCAACCA 1641672 28 100.0 32 ............................ TGCATGACTAATGCTGAATCAGTACCTGAGTT 1641612 28 100.0 32 ............................ GCCATCGGTTTTCTGTTTCTGATCGAGTTTCA 1641552 28 100.0 32 ............................ CATATAGTTATCTTTTCCTTCTATATATACGA 1641492 28 100.0 32 ............................ TATCAGCCTGATAGTCGGCACATCCTTTAGGT 1641432 28 100.0 32 ............................ TTTCTCGCAATCTGTCTGATCGCGTTTGCTGC 1641372 28 100.0 32 ............................ AACATTAAAACGAGTAAGGTTTGGCAATCTAT 1641312 28 100.0 32 ............................ TGAATCAATCAGCTACCTTAAGCGAAATGGTG 1641252 28 100.0 32 ............................ CAATTCAACTGCAATGATACGACTTGCTTGCC 1641192 28 100.0 32 ............................ AGCGTTAGTAATCTCACCAAACGCTTTAATCC 1641132 28 100.0 32 ............................ AATTCTTGTTGATACCAATCGCGCACGAAACC 1641072 28 100.0 32 ............................ CCTTTTTTTTAATTGCCTACTGCAACCCAAAA 1641012 28 100.0 32 ............................ CAAACGTGAATCACAACAAAATTTTCTTCTTC 1640952 28 100.0 32 ............................ TCATTTTTTCAAGCAGTGGGGACATTATTCGA 1640892 28 100.0 32 ............................ AACGATAAGTCGCATCATCTAGGCGTTTTCTA 1640832 28 100.0 32 ............................ GCCGAATCCGTCTGGCACAAGCTGATCACAAT 1640772 28 82.1 0 .....................AGT.TT. | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.2 32 GTTAACCATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACACTTATTGCAAGCAGGATTACAGGATTATGCCTTGATCAGTGGTGTGAATGAAACGCCTTTTGTGACCGAATATCGTTGTTATAGCCGTGTTCACCGCAAGGGACAAAGTGCGATTCGTCGTACGGAGAAGTTTTTAAAACGTATTAATAAATGGCATGAGGGCGTTCGTGATGAAATGATACAACATCAACAAAATACCCCTTATTTTCCACATGTTCATTTAAAAAGTGCTAGCACGAATCAACGTTTTATCTTAGCAGTAAAAGTCAATAAAACGGTTACTCCTTATATTGCACCATTTAACAGCTATGGGCTAAGCAATACCGCTACAGTGCCACACTTCTAACCCTATTTATAACCCTTTTTTCTGACTGGTAGAATTTACTAATAAGATCAAAGGGTTATAAATGTCTTAGAGAAAAGGGGTTTTCTTGTATATGTTCTTTAACAAATTGAAGAATAAACTGATTTTGATTATGTTATATA # Right flank : TTAAGTTGAGAGACGATCTTGTCTTATCAATACTTTAAATAAAACGCGCTTGTGAGTTGAATGAAGCTTGGATGATATTGATTATTTTTGTCATAAATAATCACCTGACTTTGTTTTAATGGTTGGGGTTGTTGTGCAAACGTCAAGAGTAAACGTTGTGGCGCTTTATCGATTTTAGTCATGATGTCACAACGTTCAATACAAGGAAGTGCGGTTTGTTTTAATAAGATTTCACCTGCATTAAATGGAAGTACTATACTAATTTTACCCAATGGGTTCACACACTTAGCCGCGAAGTTGAGCCAATCTAAATGGCTATGTGATGTTGTATAACGTGCTAAATTACGTTGTTGGCTCCCACAATCGACGCCAGGTATAAAATAAGGTGGATTTGCCACAATTAAGTCAAATTTTTCCACGGTGTGAGTGCAAAAATGGGCAATGTCTTGTTGGTGTAGGTGAATTTTAGTCGCCCATTTGGATTGTTGAATATTCTCTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTAACCATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2052069-2052276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP004391.1 Pasteurella multocida subsp. multocida OH4807 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2052069 28 100.0 32 ............................ ATGGTATTTTTGTCCATTTGACACTTGGGTAG 2052129 28 100.0 32 ............................ ATTGCTTTTATTTTGATGACTTAATCCAGGTA 2052189 28 100.0 32 ............................ TAGTAAATCATGTAGGCATGATAACCGCTTAC 2052249 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : AGTCAGTCAGAAAGGTTTAATCTATTCAGATGCCTACTCACTTATTCACCAACGCTTTAATGTGCAACATATTGATGAACTGACAGCAGAACAAGTCCCAATGGCGGTAGAGTATATTCATAAGATCGTTTTAGAGGGCGAACTGATTACAGATACATCGCCAAAAATTAAAGAAGATGAAATTGTCGTGCCTTACAATGTGTTTTATTCTTTATATAAACACGGACAACGTGGGCGACAATTAGGATATGAGGTGAGTATTTTATTGGATTCCTTGTTGAAATTATTAGGTGCAGAATACGGAAGACCTAAGCTCACAGGCTTAGCCTATGATTGCCAAGCGCAATGTATCCACTGGTTAGATTTAGCTGAAAAGATTATTGATAAGAGAAATTTAACTGGAGTAAGAGCATAAAACCACTGAAAAACCGACCGCACTTTTTATAGTGCGGTTGAAAGAATAGACTGTTTTTGTTATGTTTGAAGATAAGTATTGATTT # Right flank : ATTATCTGCAATTTATGAAATCTCAATATAGAAAATAGGCTTGACGTGAAACTTAGATAAAATGGCGTTTAGCCCTTTATATTAATCTTTGACATTGTCTTGTTTTCGGTTCTTACTCTTAATAAAGCTTTACAGTGTCACATTGAGTTTTTCGGAAAAATTAATATAGTATCGGAAATAAAAGATGCATTATAGCTATACTTTATTGATTTTAAAGACATATTATCTAAAATATTAAAAAAGCACACATTTATTTTAAACCTCAAAATTTAGGAGAAATGATGAAAAAATCAGTATTAGCTGCATTAGTATTAGGCGCAAGTTTAACTGTAACGGGTTGCTTTGATAAAGAGAGCAAAGCGGGTCAAGAAGTTGAAAAAGCAAAATCTAGCGTTGTTGAAGCGAAAGATGCCATAGTAAGCGCAGCTGGTGAAGTGAAAAACTCCGCAGCAGAGAACGCAAAAGAAGTGAAAGACGCGGCAGCAGTGAAAATGGAAGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //