Array 1 3-236 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYQ01000018.1 Streptococcus mutans B12Sm1 contig_239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 .................................... CGACGATAGCGCAGTAGATGAAGTTTTGAA 69 36 100.0 30 .................................... TTCTGGCTCTAGTGCTTATCTTGAAGATGC 135 36 100.0 30 .................................... TTTATTCGTGATGGATACAAGCGTACTGTA 201 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TCG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 23736-22973 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYQ01000034.1 Streptococcus mutans B12Sm1 contig_390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23735 36 100.0 30 .................................... TGCAAGAAGTGGCCTCGAGCAATAAGGTCA 23669 36 100.0 30 .................................... TGCGACTGTTTACGCGTTAGATACTGTATC 23603 36 100.0 30 .................................... CGTCACCGGCGTTCACGGAGACACCATGGA 23537 36 100.0 30 .................................... TGTATATAGCTAATGCTTTTTTTGAAAGGA 23471 36 100.0 30 .................................... ACAGAGGCAGACTTGCTTGCATATGCACAC 23405 36 100.0 30 .................................... CTTAGCTTCAATCGAACCTTGTTGTTCCCA 23339 36 100.0 30 .................................... TAATAATGTACAGATGATATTATCAAACAA 23273 36 100.0 31 .................................... CGTGGGACATTGGGAATATCGAATGGCCTGG 23206 36 100.0 30 .................................... GTTATCCTGCTTATGTCGTTGAAGACCGCT 23140 36 100.0 30 .................................... GATGCTTTTTTGCTTCCTCAGAAGCAAGCT 23074 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 23008 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [22993] ========== ====== ====== ====== ==================================== =============================== ================== 12 36 97.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GTT # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 370-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYQ01000084.1 Streptococcus mutans B12Sm1 contig_440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 369 36 100.0 30 .................................... ACCTAACATCTCATGTTAGAAAACCTCACA 303 36 100.0 31 .................................... ACCGTGTAGCGGCATACGGTTATGCGAACGG 236 36 100.0 30 .................................... ATCAAGAAATGGTGACTCATGCTTACGTTT 170 36 100.0 30 .................................... CGCTAGCATTTAACGCTTGCTAAGCGTGTA 104 36 100.0 30 .................................... CATGATGACAAGCTCGCGGTTGTCTGTTTC 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 103676-102182 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYQ01000084.1 Streptococcus mutans B12Sm1 contig_440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 103675 28 100.0 33 ............................ TAACATATAATCTTTACTAAAAAAATGAAAGGG 103614 28 100.0 33 ............................ TATATTCAGTAAGAAAATCAAATCTTGCTTGTG 103553 28 100.0 33 ............................ CGAATGAGTTATACACGCGCTTAGCTGCAGAGG 103492 28 100.0 33 ............................ CAGGCAAATACCCTTACACGGTCTTGACTCACG 103431 28 100.0 33 ............................ TAAAATCCACCAGTTGACTCAATCGATCCATCA 103370 28 100.0 33 ............................ TGTCTATAGAATTTTAAAGCTTACTTTTTGTAA 103309 28 100.0 33 ............................ TAAAGATTGGGCAACCCTCTGAGACTGTAGACC 103248 28 100.0 33 ............................ TACACTTCTAAAATCATAGATTGCGCATACTCG 103187 28 100.0 33 ............................ TGGACGAAAGGATAAAAAAAATATGAATACACA 103126 28 100.0 33 ............................ TACGACCACCCGCAAAATCAAAGCCTGCATTAA 103065 28 100.0 33 ............................ CACAATCGCTTTTAAAATTCGCTTTTTTGACAA 103004 28 100.0 34 ............................ CGCTCTTCTTGTGCCTCAAATTCCCGCGCTATCA 102942 28 100.0 34 ............................ TACACAAGCAGTGATTTAGCTTATGCGAACTTCA 102880 28 100.0 33 ............................ CGGCTTTCACGCTGTCAGATTTGTTGTCAACAA 102819 28 100.0 33 ............................ CAGTAACTAAACGCTGCTTGTGCTTCTCACAAA 102758 28 100.0 33 ............................ TACACTTCAGCTCTTGCGTTTTAAAAAAAGGGG 102697 28 100.0 33 ............................ CGGGCTCAAAGAGTTTAAACAGCAAATCAGGAC 102636 28 100.0 33 ............................ TATCATGATTATCCAGTCGCTTTTTACACTCTT 102575 28 100.0 33 ............................ TATTTTTGCCGTTTAGGTAAAACCCGCCAGTTG 102514 28 100.0 33 ............................ TGCTTAAGAAAACATTAACAATTTTAGGTTTAT 102453 28 100.0 33 ............................ TACCTGAGTCAGTCAAACCACCGTTTGCTTTGG 102392 28 100.0 33 ............................ CACAAGTTGAGATGGTCTTGTCTAACAAGGCTA 102331 28 100.0 33 ............................ TGATGCAAATGCTACGGGGCGTATTGTTGTAAC 102270 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 102209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 25 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //