Array 1 569696-570143 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061779.1 Pseudomonas aeruginosa strain ZBX-P12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 569696 28 100.0 32 ............................ AGGACCTGGAGCCACTGCGCAGGCACGCCGCC 569756 28 100.0 32 ............................ GCGGCGCGCATGGCGAACGCGACAAGCAGATA 569816 28 100.0 32 ............................ TCCATGCGGAGCAGGTAGCGCACCCACTCCTG 569876 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 569936 28 100.0 32 ............................ AGAAGGTGGAGAACTAGGAACTGTGTTCTTTC 569996 28 100.0 32 ............................ AACATCTTGTTATCGCACTCCAGGCTCCACAA 570056 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 570116 28 75.0 0 ....................GGCG.CGG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : GCAAAAACTGAGTGCAACACCTGACCTTTCCGGTACGGTGCTGCCCCTATGTCATATACCGAACTCAGCGTTGAAGAACGCGCCACCATCCAAATCGGCCACGCCCAGGGCTTCAGCCTGCGCAGGATTGCTCGCCTGATCAATAGGTCTCCTTCGACCATCAGTCGAGAGCTGCGCCGCAATCGAGATGTCTGTGGCAGCTACTCGGCCCGCGCGGCCCAGGAGCAGATGAAGGCCCGCCGCCAAGTCTGTCGACCGAGCCGAAAGCTGCTGCCGGGGAGCGAGCGCTTCGAACTGGTGGTTCATATGCTGCGTGAGCGTTTGTCTCCCGAACAGATTGCCGGCAAGCTGCGCCACATGAACATACCTAGCCTCAGAGATGCCTACGTCTGTCGCGAGACGATCTACAACGCGATCTATGCCCTGCCAGTGGGTGAGCTGCGTAAGGAGCTGATCATCTGTCTGCGCCAAGGCAAGACGACGCGCCGGCCGCGCTCTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 571292-571559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061779.1 Pseudomonas aeruginosa strain ZBX-P12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 571292 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 571352 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 571412 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 571472 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 571532 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCACCAGTGGGTACCTGATGTTGGTGAAGATGAACGACGCGACGGCGACTTCGGCGCTGGAAGGCTTCAGCGCCGCGCTCAATAGCATGCCGCTGGAGATGCGCAAGAGCATGACTTACGACCAGGGCCGGGAGATGGCACGACACGCCGAGATCACCCAAAGAACCGGCGTGGCGATCTACTTTTGCGACCCGCACAGCCCCTGGCAGCGCGGCAGCAACGAAAACATCAACGGCCTGATTCGCCAGTACTTGCCCAAGGGCACAGACCTGTCGGTACATAGCCAGGAGGAGCTGGACGCCATTGCGCTGCAACTGAATATGCGACCGCGTAAGCGCTTCGACTTCAAATGCCCAATCGAAGTTATGGGCGAGGTGATGCAGAAGGCCATGGCTATGCGGCATGATGCTCCAGTTTCAATTCAATGACCGTGTTGCACTCAGCTCCTGCAACCGCCCAGCTAAGAAAATGAAGGCCAGCAGGCCGAACACGATTGCGAT # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2076033-2076901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061779.1 Pseudomonas aeruginosa strain ZBX-P12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2076033 28 100.0 32 ............................ ACTAAGGACCCGAATAAATGCCAAGGCACTGG 2076093 28 100.0 32 ............................ ATCGTGCCGGATAGCAGCAGGACGCCCAGGAC 2076153 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 2076213 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 2076273 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 2076333 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 2076393 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 2076453 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 2076514 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 2076574 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 2076634 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 2076694 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 2076754 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 2076814 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 2076874 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : AGAGTGGGCGGTTGCAGGAGCTGAGTGCAACACGGTCATTGAATTGAAACTGGAGCATCATGCCGCATAGCCATGGCCTTCTGCATCACCTCGCCCATAACTTCGATTGGGCATTTGAAGTCGAAGCGCTTACGCGGTCGCATATTCAGTTGCAGCGCAATGGCGTCCAGCTCCTCCTGGCTATGTACCGACAGGTCTGTGCCCTTGGGCAAGTACTGGCGAATCAGGCCGTTGATGTTTTCGTTGCTGCCGCGCTGCCAGGGGCTGTGCGGGTCGCAAAAGTAGATCGCCACGCCGGTTCTTTGGGTGATCTCGGCGTGTCGTGCCATCTCCCGGCCCTGGTCGTAAGTCATGCTCTTGCGCATCTCCAGCGGCATGCTATTGAGCGCGGCGCTGAAGCCTTCCAGCGCCGAAGTCGCCGTCGCGTCGTTCATCTTCACCAACATCAGGTACCCACTGGTGCGTTCCACCAGCGTACCGACGGACGAGGCGTTGGCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2078046-2078493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061779.1 Pseudomonas aeruginosa strain ZBX-P12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2078046 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 2078106 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 2078166 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 2078226 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 2078286 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 2078346 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2078406 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2078466 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCAGACAGATGATCAGCTCCTTACGCAGCTCACCCACTGGCAGGGCATAGATCGCGTTGTAGATCGTCTCGCGACAGACGTAGGCATCTCTGAGGCTAGGTATGTTCATGTGGCGCAGCTTGCCGGCAATCTGTTCGGGAGACAAACGCTCACGCAGCATATGAACCACCAGTTCGAAGCGCTCGCTCCCCGGCAGCAGCTTTCGGCTCGGTCGACAGACTTGGCGGCGGGCCTTCATCTGCTCCTGGGCCGCGCGGGCCGAGTAGCTGCCACAGACATCTCGATTGCGGCGCAGCTCTCGACTGATGGTCGAAGGAGACCTATTGATCAGGCGAGCAATCCTGCGCAGGCTGAAGCCCTGGGCGTGGCCGATTTGGATGGTGGCGCGTTCTTCAACGCTGAGTTCGGTATATGACATAGGGGCAGCACCGTACCGGAAAGGTCAGGTGTTGCACTCAGTTTTTGCCGCCGCCGTGTGAGGCCGGGCAAACGGATTTGT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2088548-2087019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061779.1 Pseudomonas aeruginosa strain ZBX-P12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2088547 28 100.0 32 ............................ AACATCTTGTTATCGCACTCCAGGCTCCACAA 2088487 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 2088427 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 2088367 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 2088307 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 2088247 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 2088187 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 2088127 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 2088067 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 2088007 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 2087947 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 2087887 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 2087827 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 2087767 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 2087707 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 2087647 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 2087586 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 2087526 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 2087466 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 2087406 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 2087346 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 2087286 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 2087226 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2087166 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2087106 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2087046 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //